Method | Param | Ref simul | Number of generations | Effective size |
---|
| QTL | 0.25 | | |
|
N
e
| 100 | | 50 |
|
N
g
| 50 | 100 | |
|
N
s
| 20 | | |
|
N
p
| 100 | | |
|
dens
| 0.25 | | |
HaploMax | | 1.49 | 1.85 | 1.69 |
HAPimLDL | | 1.65 | 1.98 | 1.85 |
- Square roots of MSE values (in cM) for both methods in the case where the QTL and the markers were at equilibrium in the founder population; the haplotype is composed of the QTL and two flanking markers; the true QTL position is 3.35 cM on a 10-cM long chromosomal region; unspecified parameters are equal to the corresponding parameters in the reference simulation; in this table, QTL denotes the QTL allelic effect value, N
e
is the effective size of the population, N
g
is the number of generations, N
s
is the number of sires, N
p
is the number of progeny per sire, dens is the marker density; each scenario was simulated 500 times