From: Assessment of alternative genotyping strategies to maximize imputation accuracy at minimal cost
SNP panel code | SNP panel design1 | Number of SNP on chromosome 1 | Equivalent density across the genome | Average spacing (kb) ± SD | Cost per genotyped animal |
---|---|---|---|---|---|
H | High density | 5 936 | 60 000 | 77. 30 ± 65.22 | $120 |
L6k | 89.9 % SNP masked | 600 | 6 065 | 458. 76 ± 187.79 | $48 |
L3k | 95.0 % SNP masked | 299 | 3 022 | 913. 96 ± 402.26 | $35 |
L384 | 99.4 % SNP masked | 37 | 384 | 7359.28 ± 3403.54 | $20 |