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Table 1 Average number of base, non-base and total haplotypes per locus across replicates, at different limits of clustering of base haplotypes and different window sizes

From: Effects of the number of markers per haplotype and clustering of haplotypes on the accuracy of QTL mapping and prediction of genomic breeding values

Haplotypes Window size Clustering limit base haplotypes
   0.55 0.75 0.95
Base 2 48.2 124.1 172.4
  6 7.6 35.8 101.9
  12 6.5 15.5 45.2
  20 6.2 14.0 33.7
Non base 2 170.5 288.6 338.5
  6 114.6 202.4 291.4
  12 126.8 186.2 253.9
  20 133.9 194.0 251.7
Total 2 218.7 412.7 510.9
  6 122.2 238.2 393.3
  12 133.3 201.7 299.1
  20 140.1 208.0 285.4