Table 1 Average number of base, non-base and total haplotypes per locus across replicates, at different limits of clustering of base haplotypes and different window sizes
Haplotypes | Window size | Clustering limit base haplotypes | ||
|---|---|---|---|---|
0.55 | 0.75 | 0.95 | ||
Base | 2 | 48.2 | 124.1 | 172.4 |
6 | 7.6 | 35.8 | 101.9 | |
12 | 6.5 | 15.5 | 45.2 | |
20 | 6.2 | 14.0 | 33.7 | |
Non base | 2 | 170.5 | 288.6 | 338.5 |
6 | 114.6 | 202.4 | 291.4 | |
12 | 126.8 | 186.2 | 253.9 | |
20 | 133.9 | 194.0 | 251.7 | |
Total | 2 | 218.7 | 412.7 | 510.9 |
6 | 122.2 | 238.2 | 393.3 | |
12 | 133.3 | 201.7 | 299.1 | |
20 | 140.1 | 208.0 | 285.4 | |