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Table 3 Estimated haplotype, polygenic, total genetic and residual variances and heritabilities

From: Effects of the number of markers per haplotype and clustering of haplotypes on the accuracy of QTL mapping and prediction of genomic breeding values

Clustering limit base haplotypes Window size Haplotype variance Polygenic variance Total genetic variance1 Residual variance1
0.55 2 0.204 0.100 0.304 0.491
  6 0.186 0.149 0.335 0.498
  12 0.177 0.172 0.349 0.488
  20 0.184 0.169 0.353 0.485
0.75 2 0.195 0.073 0.268 0.476
  6 0.204 0.103 0.307 0.491
  12 0.195 0.124 0.319 0.490
  20 0.192 0.139 0.331 0.483
0.95 2 0.191 0.063 0.253 0.475
  6 0.201 0.064 0.265 0.483
  12 0.200 0.100 0.301 0.482
  20 0.198 0.104 0.302 0.486
  1. 1 Standard errors ranged from 0.013 to 0.018 for the haplotype variance, from 0.010 to 0.030 for the polygenic variance, from 0.016 to 0.033 for the total genetic variance and from 0.010 to 0.015 for the residual variance