Table 3 Accuracy (se) of breeding values in pure breed predicted based on four-breed cross data using ASGM or BSAM for three different scenarios (40 replicates)
From: Genomic selection of purebreds for crossbred performance
closely related breeds | distantly related breeds | unrelated breeds | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
1000 records | ||||||||||
Marker | VPa | ASGM | BSAM | Diffb | ASGM | BSAM | Diffb | ASGM | BSAM | Diffb |
500 | B | 0.65 | 0.60 | 0.05 | 0.46 | 0.48 | 0.02 | 0.46 | 0.50 | -0.03 |
(0.03) | (0.03) | (0.03) | (0.04) | (0.04) | (0.03) | (0.08) | (0.08) | (0.05) | ||
2000 | B | 0.84 | 0.75 | 0.09 | 0.62 | 0.58 | 0.04 | 0.52 | 0.54 | - 0.02 |
(0.02) | (0.02) | (0.02) | (0.04) | (0.04) | (0.02) | (0.03) | (0.03) | (0.01) | ||
4000 records | ||||||||||
Marker | VPa | ASGM | BSAM | Diffb | ASGM | BSAM | Diffb | ASGM | BSAM | Diff b |
500 | B | 0.78 | 0.80 | -0.02 | 0.62 | 0.72 | -0.11 | 0.55 | 0.70 | -0.14 |
(0.02) | (0.02) | (0.01) | (0.03) | (0.03) | (0.02) | (0.02) | (0.03) | (0.03) | ||
2000 | B | 0.87 | 0.85 | 0.01 | 0.85 | 0.86 | -0.01 | 0.72 | 0.62 | 0.10 |
(0.01) | (0.04) | (0.02) | (0.03) | (0.02) | (0.01) | (0.05) | (0.05) | (0.02) | ||