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Table 2 Evaluating SNP subsets using predicted residual sum of squares (A) and proportion of significant SNPs (B)

From: Comparison of classification methods for detecting associations between SNPs and chick mortality

   Number of categories (K)
Stratuma Measure K = 2 K = 3 K = 4 K = 5 K = 10
EL A 0.672 0.781 0.747 0.807 0.964
  B 0.53 0.47 0.52 0.42 0.52
EH A 0.377 0.378 0.490 0.444 0.624
  B 0.03 0.16 0.05 0.02 0.05
LL A 0.519 0.534 0.591 0.552 0.608
  B 0 0.33 0.34 0.05 0.12
LH A 0.547 0.470 0.605 0.655 0.642
  B 0.27 0.24 0.15 0.25 0.23
  1. a EL = early age-low hygiene; EH = early age-high hygiene; LL = late age-low hygiene; LH = late age-high hygiene.
  2. Best one among five SNP subsets according to measure A or B is in boldface.