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Table 2 Evaluating SNP subsets using predicted residual sum of squares (A) and proportion of significant SNPs (B)

From: Comparison of classification methods for detecting associations between SNPs and chick mortality

  

Number of categories (K)

Stratuma

Measure

K = 2

K = 3

K = 4

K = 5

K = 10

EL

A

0.672

0.781

0.747

0.807

0.964

 

B

0.53

0.47

0.52

0.42

0.52

EH

A

0.377

0.378

0.490

0.444

0.624

 

B

0.03

0.16

0.05

0.02

0.05

LL

A

0.519

0.534

0.591

0.552

0.608

 

B

0

0.33

0.34

0.05

0.12

LH

A

0.547

0.470

0.605

0.655

0.642

 

B

0.27

0.24

0.15

0.25

0.23

  1. a EL = early age-low hygiene; EH = early age-high hygiene; LL = late age-low hygiene; LH = late age-high hygiene.
  2. Best one among five SNP subsets according to measure A or B is in boldface.