Table 3 Computation time for estimating the marker effects using principal component regression (PCR), partial least square regression (PLSR) and the 'BayesB' method
From: Reducing dimensionality for prediction of genome-wide breeding values
Marker density | PCR | PLSR | 'BayesB' |
|---|---|---|---|
1N e /M | ~3 min | ~3 min | ~200 min |
2N e /M | ~15 min | ~3 min | ~700 min |
4N e /M | ~30 min | ~3 min | ~1600 min |
8N e /M | ~60 min | ~3 min | > 2800 min |