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Table 6 Allele OriginAccuracy (AOAc) and Similarity Index (If) for haplotypes inferred with the DP algorithm assuming crossbreeding (DP), with the DP algorithm assuming random mating (DP RM) and with PHASE.

From: Haplotype inference in crossbred populations without pedigree information

  DP CB DP RM PHASE
  AOAc If If If
19 Dams     
Cross 0.97 0.93 0.09 0.93
Dams   0.92 0.90 0.86
Sires   0.75 0.78 0.80
63 Dams     
Cross 0.94 0.87 0.69 0.86
Dams   0.84 0.80 0.83
Sires   0.76 0.77 0.77
109 Dams     
Cross 0.95 0.91 0.10 0.91
Dams   0.84 0.82 0.81
Sires   0.76 0.77 0.77
  1. Parameter α of the DP algorithm was set equal to 1. Data from the Commercial × Meishan crossbreeding data. Indivuals in the Dam group were from the commercial breed and individuals in the Sire group were from the Meishan breed. Parameter α was set equal to 1 in the analyses with DP.