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Table 6 Allele OriginAccuracy (AOAc) and Similarity Index (If) for haplotypes inferred with the DP algorithm assuming crossbreeding (DP), with the DP algorithm assuming random mating (DP RM) and with PHASE.

From: Haplotype inference in crossbred populations without pedigree information

 

DP CB

DP RM

PHASE

 

AOAc

If

If

If

19 Dams

    

Cross

0.97

0.93

0.09

0.93

Dams

 

0.92

0.90

0.86

Sires

 

0.75

0.78

0.80

63 Dams

    

Cross

0.94

0.87

0.69

0.86

Dams

 

0.84

0.80

0.83

Sires

 

0.76

0.77

0.77

109 Dams

    

Cross

0.95

0.91

0.10

0.91

Dams

 

0.84

0.82

0.81

Sires

 

0.76

0.77

0.77

  1. Parameter α of the DP algorithm was set equal to 1. Data from the Commercial × Meishan crossbreeding data. Indivuals in the Dam group were from the commercial breed and individuals in the Sire group were from the Meishan breed. Parameter α was set equal to 1 in the analyses with DP.
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Genetics Selection Evolution

ISSN: 1297-9686