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Table 5 Performance of five fine-mapping methods in admixture and a 20 cM segment.

From: Linear models for joint association and linkage QTL mapping

Method

Bias

 

MSE

 

LA

0.58

(0.60)

36.60

(3.42)

LDLA

0.97

(0.53)

28.43

(3.06)

LD decay

0.04

(0.49)

23.76

(2.56)

Two-marker

0.17

(0.51)

25.89

(2.50)

IBD

1.94

(0.50)

28.78

(3.43)

  1. Bias and mean square error (in cM and cM2) (with standard errors) of five fine-mapping methods: linkage analysis, joint association and linkage analysis, linkage disequilibrium decay, two-marker association, and an IBD method. The scenario is admixture and a 20 cM segment spanned with 21 SNP markers.
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Genetics Selection Evolution

ISSN: 1297-9686