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Table 2 Genetic variability and Wright statistics with different migrations, K = 10, HIM, HWD and LD

From: Assessing population genetic structure via the maximisation of genetic distance

  Scenario 2 HIM
  m = 0.05 m = 0.07 m = 0.10 K = 10 50 markers 300 markers
Genetic variability:       
n a 7.68 ± 0.04 7.75 ± 0.08 7.73 ± 0.05 8.03 ± 0.04 9.58 ± 0.03 1.14 ± 0.02
H O 0.60 ± 0.01 0.61 ± 0.01 0.62 ± 0.01 0.49 ± 0.00 0.50 ± 0.00 0.02 ± 0.00
H S 0.60 ± 0.01 0.62 ± 0.01 0.63 ± 0.01 0.50 ± 0.00 0.51 ± 0.00 0.02 ± 0.00
H T 0.62 ± 0.01 0.63 ± 0.01 0.63 ± 0.01 0.67 ± 0.00 0.79 ± 0.00 0.05 ± 0.00
Wright F statistics:       
F IS 0.00 ± 0.00 0.00 ± 0.00 0.01 ± 0.00 0.01 ± 0.00 0.01 ± 0.00 0.01 ± 0.00
F ST 0.03 ± 0.00 0.02 ± 0.00 0.01 ± 0.00 0.26 ± 0.01 0.35 ± 0.00 0.50 ± 0.01
F IT 0.03 ± 0.00 0.02 ± 0.00 0.02 ± 0.00 0.27 ± 0.01 0.36 ± 0.00 0.50 ± 0.01
  Scenario 3 (HWD) Scenario 6 (LD)
  s = 0.3 s = 0.5 s = 0.7 s = 0.9 m = 0.01 m = 0.1
Genetic variability:       
n a 8.45 ± 0.17 8.21 ± 0.08 7.78 ± 0.19 7.18 ± 0.19 1.95 ± 0.00 1.94 ± 0.00
H O 0.51 ± 0.01 0.39 ± 0.01 0.23 ± 0.01 0.09 ± 0.01 0.08 ± 0.01 0.36 ± 0.00
H S 0.60 ± 0.01 0.54 ± 0.01 0.48 ± 0.02 0.46 ± 0.02 0.09 ± 0.01 0.37 ± 0.00
H T 0.82 ± 0.00 0.81 ± 0.00 0.81 ± 0.01 0.79 ± 0.01 0.40 ± 0.00 0.40 ± 0.00
Wright F statistics:       
F IS 0.15 ± 0.01 0.29 ± 0.01 0.52 ± 0.01 0.81 ± 0.02 0.12 ± 0.02 0.02 ± 0.00
F ST 0.27 ± 0.01 0.33 ± 0.01 0.40 ± 0.02 0.42 ± 0.02 0.76 ± 0.02 0.07 ± 0.00
F IT 0.38 ± 0.01 0.52 ± 0.01 0.71 ± 0.01 0.89 ± 0.01 0.79 ± 0.02 0.09 ± 0.01
  1. Scenario 2 simulated with different migration rates (m) and a higher number of subpopulations (K = 10); hierarchical island model (HIM) with 50 microsatellites and 300 SNP; scenario 3 simulated with selfing (0.3, 0.5, 0.7 and 0.9) to generate Hardy-Weinberg disequilibrium (HWD); scenario 6 with linked loci (recombination rate = 0.06) and 1000 generations with no migration between subpopulations and 10 generations where m = 0.01 or m = 0.1 to generate linkage disequilibrium (LD); see Table 1 for abbreviations and for the explanation of scenarios