Table 2 Tests for QTL effects and corresponding empirical thresholds for 5% type 1 error based on 1000 permutations
Test | QTL in Model | QTL effect tested for | Bodyweight | Conformation score | |
|---|---|---|---|---|---|
| Â | alternative (H1) | null (H0) | Â | *LRT (5%) | *LRT (5%) |
Add | add (2) | null (1) | additive | 5.74 | 4.53 |
Addom | add + dom (3) | null (1) | additive + dominant | 6.98 | 5.84 |
pat + mat | pat + mat (4) | null (1) | paternal + maternal | 3.05 | 2.94 |
Pat | pat (5) | null (1) | paternal | 7.16 | 6.6 |
Mat | mat (6) | null (1) | maternal | 5.38 | 4.54 |
Dom | add + dom (3) | add (2) | dominant | 4.80 | 5.12 |
Imp | pat + mat (4) | add (2) | parent of origin | 3.18 | 3.43 |
**patvfull | pat + mat (4) | pat (5) | maternally expressed | 4.14 | 4.32 |
**matvfull | pat + mat (4) | mat (6) | paternally expressed | 4.5 | 3.58 |