A microsatellite-based analysis for the detection of selection on BTA1 and BTA20 in northern Eurasian cattle (Bos taurus) populations

Li, Meng-Hua; Iso-Touru, Terhi; Laurén, Hannele; Kantanen, Juha

doi:10.1186/1297-9686-42-32

Genetics Selection Evolution

Table 1 Summary of the microsatellites and basic population genetic estimates for the microsatellites

From: A microsatellite-based analysis for the detection of selection on BTA1 and BTA20 in northern Eurasian cattle (Bos taurus) populations

Locus	BTA	Genomic position (bp)		A _R	H _E	F _IS	FDIST2 test		Ewens-Watterson test
		starts	ends				F _ST	P	F _OBS	F _EXP	P _H	P _E
AGLA17	1	641402	641615	1.37	0.08	-0.049	0.017	0.010**	0.907	0.754	0.978*	0.976*
DIK4591	1	1704734	1705228	2.60	0.32	0.064	0.128	0.660	0.467	0.442	0.844	0.622
DIK1044	1	2829429	2829737	4.86	0.70	0.015	0.118	0.631	0.324	0.329	0.136	0.243
SOD1	1	2914373	2915349	4.78	0.65	0.083	0.173	0.968*	0.331	0.379	0.037*	0.047*
DIK5019	1	3900549	3900808	5.42	0.59	0.190	0.164	0.954*	0.381	0.380	0.005**	0.008**
BMS2321	1	10949260	10949302	3.58	0.45	0.154	0.094	0.410	0.429	0.486	0.424	0.052
BM1824	1	122531990	122532171	3.95	0.72	-0.083	0.122	0.655	0.450	0.487	0.030*	0.231
TGLA304	20	11460907	11460992	3.30	0.49	0.113	0.114	0.573	0.497	0.531	0.237	0.238
BMS1754	20	18439757	18439877	3.47	0.58	0.014	0.094	0.384	0.503	0.536	0.153	0.126
NRDIKM033	20	15598470	15598176	5.20	0.75	-0.004	0.098	0.372	0.234	0.213	0.415	0.466
ILSTS068	20	21675187	21675451	2.07	0.25	0.095	0.146	0.760	0.734	0.751	0.383	0.223
TGLA126	20	21808628	21808745	6.27	0.71	-0.009	0.079	0.170	0.493	0.443	0.085	0.057
BMS2461	20	25278607	25278662	4.83	0.62	0.028	0.180	0.985*	0.227	0.246	0.453	0.760
BMS1128	20	26364064	26364112	3.54	0.52	0.032	0.109	0.534	0.472	0.446	0.503	0.203
BM713	20	26977228	26977280	3.36	0.62	-0.074	0.162	0.907	0.439	0.486	0.197	0.674
DIK2695	20	30452613	30452786	3.60	0.58	-0.027	0.075	0.186	0.432	0.411	0.565	0.274
TGLA153	20	31240022	31240154	4.64	0.71	0.025	0.109	0.521	0.345	0.353	0.101	0.269
GHRpromS	20	31023202	31023306	3.12	0.43	0.006	0.114	0.581	0.426	0.446	0.726	0.268
BMS2361	20	34597279	34597368	5.10	0.72	0.019	0.125	0.698	0.329	0.351	0.045**	0.017**
DIK4835	20	35915540	35916040	4.96	0.65	0.022	0.136	0.788	0.293	0.329	0.252	0.046
AGLA29	20	3842995	38843142	5.49	0.78	-0.006	0.087	0.202	0.363	0.412	0.000**	0.000**
BMS117	20	40015465	40015564	3.88	0.67	-0.018	0.078	0.197	0.377	0.376	0.398	0.272
UMBTL78	20	40177064	40177157	4.22	0.58	-0.033	0.102	0.462	0.298	0.256	0.884	0.229
BM2113	2	88476	88616	5.44	0.79	-0.052	0.119	0.673	0.353	0.379	0.003**	0.005**
INRA023	3	35576043	35576259	4.85	0.70	0.009	0.113	0.564	0.309	0.306	0.238	0.107
ETH10	5	55333999	55334220	4.57	0.67	0.002	0.134	0.789	0.432	0.446	0.049*	0.031*
ETH152	5	NA	NA	4.56	0.71	0.012	0.081	0.171	0.425	0.486	0.008**	0.020
ILSTS006	7	86555402	86555693	5.14	0.77	-0.007	0.076	0.110	0.331	0.351	0.032*	0.057
HEL9	8	NA	NA	5.04	0.70	0.020	0.134	0.792	0.262	0.289	0.240	0.245
ETH225	9	8089454	8089601	5.02	0.71	0.013	0.113	0.560	0.410	0.478	0.009**	0.009**
MM12	9	NA	NA	7.76	0.67	0.017	0.123	0.671	0.312	0.347	0.244	0.112
ILSTS005	10	93304132	93304315	2.17	0.43	-0.026	0.083	0.356	0.686	0.664	0.358	0.390
CSRM60	10	70549981	70550081	7.03	0.72	0.011	0.073	0.094	0.405	0.418	0.046*	0.038*
HEL13	11	NA	NA	3.14	0.51	0.081	0.125	0.678	0.402	0.407	0.529	0.564
INRA032	11	49569411	49569592	3.81	0.62	-0.010	0.142	0.812	0.511	0.537	0.063	0.016
INRA037	11	70730695	70730819	4.54	0.58	0.030	0.129	0.717	0.266	0.243	0.830	0.462
INRA005	12	71751518	71751656	3.18	0.56	0.032	0.088	0.321	0.594	0.596	0.114	0.096
CSSM66	14	6128576	6128773	5.91	0.74	0.002	0.137	0.873	0.312	0.352	0.000**	0.003**
HEL1	15	NA	NA	3.99	0.67	0.020	0.072	0.138	0.468	0.445	0.119	0.155
SPS115	15	NA	NA	5.40	0.58	0.039	0.096	0.416	0.478	0.482	0.228	0.146
INRA035	16	62926476	62926577	2.72	0.23	0.391	0.072	0.266	0.521	0.488	0.746	0.421
TGLA53	16	22214785	22214925	12.25	0.74	0.071	0.099	0.354	0.195	0.213	0.063	0.037
ETH185	17	36598852	36599086	8.31	0.68	0.039	0.146	0.877	0.336	0.303	0.186	0.196
INRA063	18	37562469	37562645	3.31	0.57	0.031	0.110	0.546	0.537	0.487	0.270	0.135
TGLA227	18	60360145	60360234	10.71	0.82	0.005	0.076	0.075	0.282	0.315	0.005**	0.012*
ETH3	19	NA	NA	4.44	0.65	0.009	0.135	0.787	0.407	0.406	0.073	0.139
HEL5	21	11850292	11850455	4.64	0.66	0.038	0.151	0.903	0.424	0.410	0.023*	0.104
TGLA122	21	50825795	50825936	11.36	0.74	0.007	0.069	0.065	0.210	0.213	0.538	0.152
HAUT24	22	45733839	45733962	7.09	0.70	0.025	0.143	0.861	0.406	0.424	0.004**	0.027*
BM1818	23	35634770	35635033	4.03	0.63	0.019	0.102	0.458	0.538	0.486	0.144	0.013*
HAUT27	26	26396836	26396987	8.85	0.61	0.126	0.103	0.453	0.376	0.396	0.083	0.003**

BTA, Bos taurus autosome; A_R, allelic richness; H_E, expected heterozygosity, F_IS, inbreeding coefficient, observed homozygosity, F_OBS, and expected homozygosity, F_EXP, NA, not available; the probabilities for the Ewens-Watterson test were calculated based on homozygosity (P_H) or Fishers's exact test (P_E); *, the significance level of P < 0.05, **, the significance level of P < 0.01; the genomic positions for the loci are BLASTed against STS or primer sequence in ENSEMBL cow genome Btau4.0 http://www.ensembl.org/Bos_taurus/Info/Index updated until 11/02/2010

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ISSN: 1297-9686

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