Method | Normal | h2= 0.25 | nTr = 1,000 | MAF > 0.10 |
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BM | 423.25 (3.73) | 429.57 (3.88) | 820.75 (9.05) | 109.49 (1.90) |
LARS | 211.75 (3.28) | 210.92 (2.62) | 1058.38 (9.34) | 57.37 (1.80) |
PLSR | 4.05 (0.10) | 4.10 (0.18) | 6.47 (0.15) | 0.81 (0.02) |
- Situation normal: heritability equal to 0.5, size of the training population equal to 500 individuals, and all markers included in the data. Situation h2 = 0.25: heritability was decreased from 0.50 to 0.25. Situation nTr = 1,000: size of training population was increased from 500 to 1,000 individuals. Situation MAF > 0.10: markers with a MAF below 0.10 were excluded from the data. The table summarizes ten simulations for the scenario of intermediate number of QTL and equal QTL variance.