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Table 1 Phasing performance for real data sets

From: A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes

Dataset 1Nb individuals 2Nb SNP 3Core/CplusT length 4M/E% 5Time 6% phased
Sheep chr. 4 1019 2278 100/300 1.00 3 min 39 s 98.17
Sheep chr. 5 1016 1927 100/400 1.00 5 min 1 s 97.62
Pig chr. 1 2723 3999 100/500 0.00 364 min 96.87
Beef chr. 24 2171 874 100/300 0.00 17 min 8 s 98.42
Dairy chr. 1 5057 2296 100/400 0.00 456 min 97.99
Human chr. 1 879 4472 100/300 1.00 3 min 29 s 93.73
  1. 1Numbers of individuals in the dataset; 2Numbers of SNP to be phased; 3Optimal core and CplusT length parameter; 4Optimal missing genotype/genotype error % (M/E%) error threshold parameter; 5Computation time measured on a 64 bit desktop with an Intel i7 3.07 GHz quad core processor running Linux was used to measure computation time; computation time includes time required to parse and summarise the data and write out the results; 6Percentage of alleles phased