Table 2 Percentage of alleles correctly/incorrectly phased by the most optimal setings1 for the simulated data sets
From: A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes
| Â | Ne 100 | Â | Ne 1000 | Â |
|---|---|---|---|---|
| Â | with pedigree | without pedigree | with pedigree | without pedigree |
Pedigree 1 | Â | 99.11/0.30 | Â | 99.11/0.30 |
Pedigree 2 NPG2 | 97.85/0.43 | 98.49/0.63 | 97.73/0.29 | 97.88/0.39 |
Pedigree 2 PG3 | 98.85/0.49 | 99.03/0.42 | 99.70/0.17 | 99.48/0.17 |
Pedigree 3 NPG2 | 98.35/0.38 | 98.61/0.63 | 99.23/0.14 | 99.14/0.27 |
Pedigree 3 PG3 | 99.23/0.37 | 99.05/0.41 | 99.76/0.16 | 99.58/0.13 |
Pedigree 4 NPG2 | 98.20/0.41 | 98.61/0.63 | 98.19/0.41 | 98.61/0.63 |
Pedigree 4 PG3 | 99.35/0.31 | 99.29/0.32 | 99.74/0.20 | 99.59/0.15 |
Pedigree 5 | 97.59/0.42 | 98.28/0.60 | 99.30/0.30 | 99.31/0.22 |
Pedigree 6 sires | 97.05/0.45 | 98.40/0.62 | 99.05/0.17 | 99.25/0.20 |
Pedigree 6 last 2000 | 98.24/0.39 | 98.24/0.39 | 99.34/0.20 | 99.42/0.26 |
Pedigree 7 sires | 97.56/0.40 | 98.71/0.50 | 98.98/0.20 | 99.15/0.29 |
Pedigree 7 last 2000 | 96.86/0.46 | 98.40/0.66 | 98.85/0.20 | 99.34/0.26 |
Pedigree 8 | 95.01/1.10 | 96.67/1.39 | 96.02/0.57 | 96.36/1.01 |