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Table 1 The average accuracy of breeding value estimates (±SE) in the test set obtained from three methods of analysis of reference population 1 with 60,000 SNPs and different genetic models

From: Different models of genetic variation and their effect on genomic evaluation

Model No. QTL Bayes B gBLUP BLUP Est. h2 (Range) 1
QM 100 0.82 (0.007) 0.56 (0.017) 0.46 (0.023) 0.32 (0.29-0.34)
  1000 0.65 (0.012) 0.59 (0.008) 0.47 (0.007) 0.31 (0.27-0.32)
  10,000 0.57 (0.010) 0.58 (0.010) 0.47 (0.009) 0.32 (0.29-0.34)
  IM 0.55 (0.009) 0.56 (0.010) 0.46 (0.006) 0.29 (0.28-0.32)
RM 100 0.73 (0.021) 0.46 (0.024) 0.42 (0.015) 0.2 (0.15-0.37)
  1000 0.40 (0.050) 0.37(0.036) 0.36 (0.031) 0.12 (0.06-0.22)
Polygenic   0.39 (0.013) 0.40(0.012) 0.45 (0.012) 0.29 (0.27-0.32)
  1. 1 Heritability was estimated using the REML method assuming the animal model.