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Table 2 The average accuracy of breeding value estimates (±SE) in the test set obtained from three methods of analysis of reference population 2 with 60,000 SNPs and different genetic models

From: Different models of genetic variation and their effect on genomic evaluation

Model No. QTL Bayes B gBLUP BLUP
QM 100 0.77 (0.014) 0.37 (0.018) 0.01 (0.011)
  1000 0.49 (0.015) 0.38 (0.018) 0.08 (0.018)
  10,000 0.33 (0.013) 0.32 (0.010) 0.02 (0.007)
  IM 0.35 (0.012) 0.36 (0.015) 0.09 (0.009)
RM 100 0.67 (0.022) 0.26 (0.027) 0.01 (0.021)
  1000 0.31 (0.044) 0.25 (0.022) 0.04 (0.015)
Polygenic   -0.01 (0.017) 0.00 (0.010) 0.07 (0.009)