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Table 2 Comparisons performed using Limma

From: Comparative expression profiling of E. coli and S. aureus inoculated primary mammary gland cells sampled from cows with different genetic predispositions for somatic cell score

Analyses Comparison Factors
Analysis 1 24 h - 1 h treatment X genotype
  24 h - 6 h  
  6 h - 1 h  
Analysis 2 inoculated - control 24 h pathogen X genotype
  inoculated - control 6 h  
  inoculated - control 1 h  
Analysis 3 (inoculated - control 24 h) - (inoculated - control 1 h) pathogen X genotype
  (inoculated - control 24 h) - (inoculated - control 6 h)  
  (inoculated - control 6 h) - (inoculated - control 1 h)  
  1. Summary of comparisons made in each of the three analyses; all analyses were performed separately for each combination of factors: genotype (SCS-BTA18-Q, SCS-BTA18-q) and treatment (E. coli, S. aureus and control treatment) in Analysis 1 or genotype (SCS-BTA18-Q, SCS-BTA18-q) and pathogen (E. coli, S. aureus) in Analysis 2 and Analysis 3.
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