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Table 4 Type I and II error rates for the different methods

From: Identification of Mendelian inconsistencies between SNP and pedigree information of sibs

   PAR-OFF + SIB SIB only
Test Permuted pedigree1 Type I Type II Type I Type II
PAR-OFF 1% 0.0019 0.2970   
  10% 0.0210 0.3098   
  25% 0.0532 0.3409   
SIBCOUNT 1% 0.0001 0.2452 0.0003 0.0870
  10% 0.0055 0.0516 0.0252 0.0534
  25% 0.0269 0.0717 0.0920 0.0698
SIBREL 1% 0.0002 0.3132 0.0005 0.1421
  10% 0.0053 0.0981 0.0239 0.1295
  25% 0.0240 0.1127 0.0782 0.1256
  1. Methods SIBCOUNT and SIBREL were either preceded by deleting animals causing parent-offspring inconsistencies (PAR-OFF) or not
  2. 1Pedigree data was permuted against genotype data for either 1%, 10%, or 25%
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Genetics Selection Evolution

ISSN: 1297-9686