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Table 4 Type I and II error rates for the different methods

From: Identification of Mendelian inconsistencies between SNP and pedigree information of sibs

  

PAR-OFF + SIB

SIB only

Test

Permuted pedigree1

Type I

Type II

Type I

Type II

PAR-OFF

1%

0.0019

0.2970

  
 

10%

0.0210

0.3098

  
 

25%

0.0532

0.3409

  

SIBCOUNT

1%

0.0001

0.2452

0.0003

0.0870

 

10%

0.0055

0.0516

0.0252

0.0534

 

25%

0.0269

0.0717

0.0920

0.0698

SIBREL

1%

0.0002

0.3132

0.0005

0.1421

 

10%

0.0053

0.0981

0.0239

0.1295

 

25%

0.0240

0.1127

0.0782

0.1256

  1. Methods SIBCOUNT and SIBREL were either preceded by deleting animals causing parent-offspring inconsistencies (PAR-OFF) or not
  2. 1Pedigree data was permuted against genotype data for either 1%, 10%, or 25%