From: Assessment of alternative genotyping strategies to maximize imputation accuracy at minimal cost
Scenario | Genotyping strategy1 | Cost: $ | Imputation accuracy: R-squared | |||||
---|---|---|---|---|---|---|---|---|
Other | Grandparents | Parents | Testing individuals | |||||
MGS + PGS | MGD + PGD | Sire | Dam | |||||
CostA | H | H | 0 | H | 0 | L384 | −2 | .888 |
H | H | L384 | H | L384 | L384 | 20.58 | .935 | |
H | H | L3k | H | L3k | L384 | 24.74 | .955 | |
H | H | L6k | H | L6k | L384 | 26.28 | .956 | |
H | H | H | H | H | L384 | 34.84 | .967 | |
H | H | 0 | H | 0 | L3k | −2 | .968 | |
H | H | L384 | H | L384 | L3k | −2 | .980 | |
H | H | L3k | H | L3k | L3k | 35.58 | .985 | |
H | H | L6k | H | L6k | L3k | 41.28 | .988 | |
H | H | H | H | H | L3k | 49.84 | .990 | |
H | H | 0 | H | 0 | L6k | −2 | .981 | |
H | H | L384 | H | L384 | L6k | −2 | .987 | |
H | H | L3k | H | L3k | L6k | −2 | .991 | |
H | H | L6k | H | L6k | L6k | 48.58 | .991 | |
H | H | H | H | H | L6k | 62.84 | .996 | |
H | H | H | H | H | H | 120.00 | 1.000 |