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Table 2 Simulated marker and QTL data

From: Long-term response to genomic selection: effects of estimation method and reference population structure for different genetic architectures

QTL

SNP

QTL

 
 

number

MAF

r2

number

MAF

r2

R2

Low

1429.4 (2.6)

0.09 (0.00)

0.05 (0.01)

34.4 (0.1)

0.27 (0.02)

0.01 (0.00)

0.46 (0.05)

High

1429.2 (2.6)

0.09 (0.00)

0.05 (0.01)

339.9 (1.2)

0.27 (0.01)

0.15 (0.01)

0.47 (0.02)

  1. Average (standard error) of the number, minor allele frequency (MAF), and linkage disequilibrium (r2) with flanking markers, of markers and QTL and average maximum linkage disequilibrium between a marker and each QTL (R2); simulated number of QTL was low or high; summary of 30 replicated simulations
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Genetics Selection Evolution

ISSN: 1297-9686