TY - JOUR AU - Scheet, P. AU - Stephens, M. PY - 2006 DA - 2006// TI - A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase JO - Am J Hum Genet VL - 78 UR - https://doi.org/10.1086/502802 DO - 10.1086/502802 ID - Scheet2006 ER - TY - JOUR AU - Li, Y. AU - Abecasis, G. PY - 2006 DA - 2006// TI - Mach 1.0: Rapid Haplotype Reconstruction and Missing Genotype Inference JO - Am J Hum Genet VL - S79 ID - Li2006 ER - TY - JOUR AU - Browning, S. R. AU - Browning, B. L. PY - 2007 DA - 2007// TI - Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering JO - Am J Hum Genet VL - 81 UR - https://doi.org/10.1086/521987 DO - 10.1086/521987 ID - Browning2007 ER - TY - JOUR AU - Howie, B. N. AU - Donnelly, P. AU - Marchini, J. PY - 2009 DA - 2009// TI - A flexible and accurate genotype imputation method for the next generation of genome-wide association studies JO - PLoS Genet VL - 5 UR - https://doi.org/10.1371/journal.pgen.1000529 DO - 10.1371/journal.pgen.1000529 ID - Howie2009 ER - TY - JOUR AU - Druet, T. AU - Georges, M. PY - 2010 DA - 2010// TI - A Hidden Markov model combining linkage and linkage disequilibrium information for haplotype reconstruction and quantitative trait locus fine mapping JO - Genetics VL - 184 UR - https://doi.org/10.1534/genetics.109.108431 DO - 10.1534/genetics.109.108431 ID - Druet2010 ER - TY - CHAP AU - Habier, D. AU - Fernando, R. L. AU - Garrick, D. J. PY - 2010 DA - 2010// TI - A combined strategy to infer high-density SNP haplotypes in large pedigrees BT - Proceedings of the 9th World Congress on Genetics Applied to Livestock production: 1–6 ID - Habier2010 ER - TY - JOUR AU - Daetwyler, H. D. AU - Wiggans, G. R. AU - Hayes, B. J. AU - Woolliams, J. A. AU - Goddard, M. E. PY - 2011 DA - 2011// TI - Imputation of missing genotypes from sparse to high density using long-range phasing JO - Genetics VL - 189 UR - https://doi.org/10.1534/genetics.111.128082 DO - 10.1534/genetics.111.128082 ID - Daetwyler2011 ER - TY - JOUR AU - VanRaden, P. M. AU - O’Connell, J. R. AU - Wiggans, G. R. AU - Weigel, K. A. PY - 2011 DA - 2011// TI - Genomic evaluations with many more genotypes JO - Genet Sel Evol VL - 43 UR - https://doi.org/10.1186/1297-9686-43-10 DO - 10.1186/1297-9686-43-10 ID - VanRaden2011 ER - TY - JOUR AU - Misztal, I. AU - Legarra, A. AU - Aguilar, I. PY - 2009 DA - 2009// TI - Computing procedures for genetic evaluation including phenotypic, full pedigree, and genomic information JO - J Dairy Sci VL - 92 UR - https://doi.org/10.3168/jds.2009-2064 DO - 10.3168/jds.2009-2064 ID - Misztal2009 ER - TY - JOUR AU - Vitezica, Z. G. AU - Aguilar, I. AU - Misztal, I. AU - Legarra, A. PY - 2011 DA - 2011// TI - Bias in genomic predictions for populations under selection JO - Genet Res (Camb) VL - 93 UR - https://doi.org/10.1017/S001667231100022X DO - 10.1017/S001667231100022X ID - Vitezica2011 ER - TY - JOUR AU - Meuwissen, T. H. E. AU - Luan, T. AU - Woolliams, J. A. PY - 2011 DA - 2011// TI - The unified approach to the use of genomic and pedigree information in genomic evaluations revisited JO - J Anim Breed Genet VL - 128 UR - https://doi.org/10.1111/j.1439-0388.2011.00966.x DO - 10.1111/j.1439-0388.2011.00966.x ID - Meuwissen2011 ER - TY - JOUR AU - Gengler, N. AU - Mayeres, P. AU - Szydlowski, M. PY - 2007 DA - 2007// TI - A simple method to approximate gene content in large pedigree populations: application to the myostatin gene in dual-purpose Belgian Blue cattle JO - Animal VL - 1 UR - https://doi.org/10.1017/S1751731107392628 DO - 10.1017/S1751731107392628 ID - Gengler2007 ER - TY - JOUR AU - Zhang, Z. AU - Liu, J. F. AU - Ding, X. D. AU - Bijma, P. AU - de Koning, D. J. AU - Zhang, Q. PY - 2010 DA - 2010// TI - Best linear unbiased prediction of genomic breeding values using trait-specific marker-derived relationship matrix JO - PLoS ONE VL - 5 UR - https://doi.org/10.1371/journal.pone.0012648 DO - 10.1371/journal.pone.0012648 ID - Zhang2010 ER - TY - JOUR AU - VanRaden, P. M. PY - 2008 DA - 2008// TI - Efficient methods to compute genomic predictions JO - J Dairy Sci VL - 91 UR - https://doi.org/10.3168/jds.2007-0980 DO - 10.3168/jds.2007-0980 ID - VanRaden2008 ER - TY - JOUR AU - Meuwissen, T. H. E. AU - Hayes, B. J. AU - Goddard, M. E. PY - 2001 DA - 2001// TI - Prediction of total genetic value using genome-wide dense marker maps JO - Genetics VL - 157 ID - Meuwissen2001 ER - TY - JOUR AU - Kong, A. AU - Masson, G. AU - Frigge, M. L. AU - Gylfason, A. AU - Zusmanovich, P. AU - Thorleifsson, G. AU - Olason, P. I. AU - Ingason, A. AU - Steinberg, S. AU - Rafnar, T. AU - Sulem, P. AU - Mouy, M. AU - Jonsson, F. AU - Thorsteinsdottir, U. AU - Gudbjartsson, D. F. AU - Stefansson, H. AU - Stefansson, K. PY - 2008 DA - 2008// TI - Detection of sharing by descent, long-range phasing and haplotype imputation JO - Nat Genet VL - 40 UR - https://doi.org/10.1038/ng.216 DO - 10.1038/ng.216 ID - Kong2008 ER - TY - JOUR AU - Hickey, J. M. AU - Kinghorn, B. P. AU - Tier, B. AU - Wilson, J. F. AU - Dunstan, N. AU - van der Werf, J. H. J. PY - 2011 DA - 2011// TI - A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes JO - Genet Sel Evol VL - 43 UR - https://doi.org/10.1186/1297-9686-43-12 DO - 10.1186/1297-9686-43-12 ID - Hickey2011 ER - TY - JOUR AU - Kerr, R. J. AU - Kinghorn, B. P. PY - 1996 DA - 1996// TI - An efficient algorithm for segregation analysis in large populations JO - J Anim Breed Genet VL - 113 UR - https://doi.org/10.1111/j.1439-0388.1996.tb00636.x DO - 10.1111/j.1439-0388.1996.tb00636.x ID - Kerr1996 ER - TY - JOUR AU - Hao, K. AU - Chudin, E. AU - McElwee, J. AU - Schadt, E. E. PY - 2009 DA - 2009// TI - Accuracy of genome-wide imputation of untyped markers and impacts on statistical power for association studies JO - BMC Genet VL - 10 UR - https://doi.org/10.1186/1471-2156-10-27 DO - 10.1186/1471-2156-10-27 ID - Hao2009 ER - TY - JOUR AU - Marchini, J. AU - Howie, B. PY - 2010 DA - 2010// TI - Genotype imputation for genome-wide association studies JO - Nat Rev Genet VL - 11 UR - https://doi.org/10.1038/nrg2796 DO - 10.1038/nrg2796 ID - Marchini2010 ER - TY - JOUR AU - Hickey, J. M. AU - Cross, J. AU - Babu, R. PY - 2012 DA - 2012// TI - de los Campos G: Factors Affecting the Accuracy of Genotype Imputation in Populations from Several Maize Breeding Programs JO - Crop Sci VL - 52 UR - https://doi.org/10.2135/cropsci2011.07.0358 DO - 10.2135/cropsci2011.07.0358 ID - Hickey2012 ER - TY - BOOK AU - Fernando, R. L. PY - 2010 DA - 2010// TI - Lecture Notes – Bayesian methods for GWAS PB - UNE CY - Australia ID - Fernando2010 ER - TY - BOOK AU - Hickey, J. M. AU - Tier, B. PY - 2009 DA - 2009// TI - AlphaBayes: user manual PB - UNE CY - Australia ID - Hickey2009 ER - TY - JOUR AU - Aguilar, I. AU - Misztal, I. AU - Johnson, D. AU - Legarra, A. AU - Tsuruta, S. AU - Lawlor, T. PY - 2010 DA - 2010// TI - A unified approach to utilize phenotypic, full pedigree, and genomic information for genetic evaluation of Holstein final score JO - J Dairy Sci VL - 93 UR - https://doi.org/10.3168/jds.2009-2730 DO - 10.3168/jds.2009-2730 ID - Aguilar2010 ER - TY - CHAP AU - Hickey, J. M. AU - Kinghorn, B. P. AU - Cleveland, M. AU - Tier, B. AU - van der Werf, J. H. J. PY - 2010 DA - 2010// TI - Recursive Long Range Phasing And Long Haplotype Library Imputation: Application to Building A Global Haplotype Library for Holstein cattle BT - Proceedings of the 9thWorld Congress on Genetics Applied to Livestock production: 1–6 ID - Hickey2010 ER - TY - JOUR AU - Cleveland, M. A. AU - Hickey, J. M. AU - Kinghorn, B. P. PY - 2011 DA - 2011// TI - Genotype imputation for the prediction of genomic breeding values in non-genotyped and low-density genotyped individuals JO - BMC Proceedings VL - 5 UR - https://doi.org/10.1186/1753-6561-5-S3-S6 DO - 10.1186/1753-6561-5-S3-S6 ID - Cleveland2011 ER - TY - CHAP AU - Kinghorn, B. P. AU - Hickey, J. M. AU - van der Werf, J. H. J. PY - 2010 DA - 2010// TI - Reciprocal recurrent genomic selection for total genetic merit in crossbred individuals BT - Proceedings of the 9thWorld Congress on Genetics Applied to Livestock production: 1–6 ID - Kinghorn2010 ER - TY - JOUR AU - Windig, J. J. AU - Meuwissen, T. H. E. PY - 2004 DA - 2004// TI - Rapid haplotype reconstruction in pedigrees with dense marker maps JO - J Anim Breed Genet VL - 121 UR - https://doi.org/10.1046/j.1439-0388.2003.00439.x DO - 10.1046/j.1439-0388.2003.00439.x ID - Windig2004 ER - TY - JOUR AU - Patry, C. AU - Ducrocq, V. PY - 2011 DA - 2011// TI - Accounting for genomic pre-selection in national BLUP evaluations in dairy cattle JO - Genet Sel Evol VL - 43 UR - https://doi.org/10.1186/1297-9686-43-30 DO - 10.1186/1297-9686-43-30 ID - Patry2011 ER - TY - JOUR AU - Powell, J. E. AU - Visscher, P. M. AU - Goddard, M. E. PY - 2010 DA - 2010// TI - Reconciling the analysis of IBD and IBS in complex trait studies JO - Nat Rev Genet VL - 11 UR - https://doi.org/10.1038/nrg2865 DO - 10.1038/nrg2865 ID - Powell2010 ER - TY - JOUR AU - Clark, S. A. AU - Hickey, J. M. AU - van der Werf, J. H. J. PY - 2011 DA - 2011// TI - Different models of genetic variation and their effect on genomic evaluation JO - Genet Sel Evol VL - 43 UR - https://doi.org/10.1186/1297-9686-43-18 DO - 10.1186/1297-9686-43-18 ID - Clark2011 ER - TY - JOUR AU - Legarra, A. AU - Aguilar, I. AU - Misztal, I. PY - 2009 DA - 2009// TI - A relationship matrix including full pedigree and genomic information JO - J Dairy Sci VL - 92 UR - https://doi.org/10.3168/jds.2009-2061 DO - 10.3168/jds.2009-2061 ID - Legarra2009 ER - TY - JOUR AU - Christensen, O. AU - Lund, M. PY - 2010 DA - 2010// TI - Genomic prediction when some animals are not genotyped JO - Genet Sel Evol VL - 42 UR - https://doi.org/10.1186/1297-9686-42-2 DO - 10.1186/1297-9686-42-2 ID - Christensen2010 ER -