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Table 1 Accuracy of genotype imputation from 3K to 50K with ChromoPhase, Beagle and PLSR algorithms for founders (F) and non-founders (NF)

From: Use of partial least squares regression to impute SNP genotypes in Italian Cattle breeds

 

Imputation accuracy

Type

ChromoPhase1

Beagle

PLSR

NF

0.925

0.926

0.929

F

0.728

0.868

0.924

  1. 1Values from Daetwyler et al. [6].
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Genetics Selection Evolution

ISSN: 1297-9686