From: Imputation of high-density genotypes in the Fleckvieh cattle population
Number of animals in reference and validation population | Beagle | MaCH | findhap.f90 | Minimac | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Correct alleles | Correct genotypesa | rTG,IG | Correct alleles | Correct genotypes | rTG,IG | Correct alleles | Correct genotypes | rTG,IG | Correct alleles | Correct genotypes | rTG,IG | |
50 / 747 | 0.914 | 0.840 | 0.858 | 0.966 | 0.933 | 0.945 | 0.925 | 0.858 | 0.865 | 0.971 | 0.942 | 0.953 |
100 / 697 | 0.963 | 0.927 | 0.940 | 0.985 | 0.970 | 0.976 | 0.959 | 0.921 | 0.933 | 0.986 | 0.972 | 0.977 |
200 / 597 | 0.986 | 0.972 | 0.977 | 0.993 | 0.987 | 0.989 | 0.978 | 0.956 | 0.965 | 0.993 | 0.986 | 0.989 |
400 / 397 | 0.993 | 0.987 | 0.989 | 0.996 | 0.993 | 0.994 | 0.986 | 0.973 | 0.978 | 0.996 | 0.992 | 0.993 |