Table 1 Number and type of animals in each of the three analyzed datasets
From: Error rate for imputation from the Illumina BovineSNP50 chip to the Illumina BovineHD chip
Dataset | HD reference | Additional 50 k genotypes (males) | Validation animals (males) | Imputation method applied | ||||
|---|---|---|---|---|---|---|---|---|
Males | Females | A | B | C | D | |||
Beagle 2.1.3/DAGPHASE | Beagle 2.1.3/DAGPHASE | Beagle 3.3.0 | DAGPHASE | |||||
scale 2.0, shift 0.1 | scale 1.0, shift 0.0 | |||||||
Dataset 1 | 488 | 0 | 0 | 60 | Yes | Yes | Yes | Yes |
Dataset 2 | 898 | 331 | 0 | 60 | No | No | Yes | No |
Dataset 3 | 488 | 0 | 2200 | 60 | Yes | No | Yes | No |