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Table 3 Average allelic imputation error rate (%) for each of six chromosomes and averaged across chromosomes

From: Error rate for imputation from the Illumina BovineSNP50 chip to the Illumina BovineHD chip

BTA

Dataset/Method

Dataset 1

Dataset 2

Dataset 3

A

B

C

D

C

A

C

1

1.82

0.89

0.72

0.76

0.47

1.80

0.70

6

1.73

0.81

0.61

0.65

0.38

1.71

0.58

11

2.05

0.89

0.66

0.71

0.40

1.98

0.61

14

1.82

0.76

0.56

0.61

0.36

1.76

0.54

20

1.94

0.86

0.68

0.71

0.35

1.88

0.64

29

2.41

1.05

0.82

0.84

0.52

2.38

0.78

Average

1.91

0.87

0.67

0.71

0.41

1.87

0.64

  1. Results are presented for four methods and three datasets: method A is a combination of Beagle 2.1.3 and DAGPHASE with scale and shift parameters equal to 2.0 and 0.1; method B is the same as method A, but with scale and shift parameters equal to 1.0 and 0.0; method C is Beagle version 3.3.0; method D is DAGPHASE using DAG from method C.
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Genetics Selection Evolution

ISSN: 1297-9686