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Table 4 Average, minimum and maximum computation time (h) per chromosome for each of four methods applied to dataset 1

From: Error rate for imputation from the Illumina BovineSNP50 chip to the Illumina BovineHD chip

  

Method

  
 

A

B

C

D

Average

1.7

6.9

0.7

0.3

Minimum

0.8

3.0

0.4

0.2

Maximum

2.9

11.9

1.1

0.5

  1. Method A is a combination of Beagle 2.1.3 and DAGPHASE with scale and shift parameters equal to 2.0 and 0.1; method B is the same as method A, but with scale and shift parameters equal to 1.0 and 0.0; method C is Beagle version 3.3.0; method D is DAGPHASE using DAG from method C.
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Genetics Selection Evolution

ISSN: 1297-9686