Concordance analysis for QTL detection in dairy cattle: a case study of leg morphology

Table 2 QTL status prediction counts

QTL	Homozygous	Heterozygous	Unknown	n_poly	p_c
1	35	6	30	20 486	4.28 × 10^-24
3	29	15	27	17 365	4.70 × 10^-23
4	42	29	0	21 333	4.28 × 10^-35
6	37	34	0	23 499	1.95 × 10^-33
7	24	29	18	13 858	7.86 × 10^-24
9	41	30	0	12 124	9.06 × 10^-35
11	35	36	0	29 105	9.66 × 10^-33
12	41	30	0	27 411	9.06 × 10^-35
13	26	20	25	28 541	1.25 × 10^-22
14	34	37	0	22 154	2.20 × 10^-32
15	37	34	0	17 454	1.95 × 10^-33
17	17	20	34	25 321	6.30 × 10^-17
18	42	29	0	15 746	4.28 × 10^-35
19	36	35	0	27 747	4.32 × 10^-33
20	46	25	0	22 771	2.22 × 10^-36

For the QTL for which QTL statuses could be inferred, the number of homozygous, heterozygous and unknown individuals, the number of polymorphisms in the QTL region (n_poly) and the probability of concordance by chance (p_c).

ISSN: 1297-9686