Table 5 Mixed model equations for marker effects model with observed and imputed marker covariates for the example in Table 1
|  | μ | μ g | m 1 | m 2 | m 3 | m 4 | m 5 | m 6 | m 7 | m 8 | m 9 | m 10 | ε 3 | ε 5 | ε 6 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
μ | 5.00 | -3.50 | 5.00 | 4.50 | 2.50 | 3.50 | 4.00 | 0.00 | 4.50 | 4.50 | 4.50 | 2.50 | 1.00 | 1.00 | 1.00 |
μ g | -3.50 | 3.25 | -4.75 | -4.00 | -2.25 | -3.25 | -4.00 | 0.00 | -4.25 | -4.00 | -4.25 | -2.50 | 0.00 | -1.00 | -0.50 |
m 1 | 5.00 | -4.75 | 8.61 | 5.75 | 3.75 | 4.75 | 6.50 | 0.00 | 5.75 | 5.75 | 5.75 | 3.75 | 0.00 | 1.50 | 0.50 |
m 2 | 4.50 | -4.00 | 5.75 | 6.36 | 3.00 | 4.00 | 4.50 | 0.00 | 5.00 | 5.25 | 5.00 | 2.75 | 0.00 | 1.50 | 1.00 |
m 3 | 2.50 | -2.25 | 3.75 | 3.00 | 3.36 | 2.25 | 3.00 | 0.00 | 2.25 | 3.00 | 2.25 | 1.50 | 0.00 | 1.00 | 0.50 |
m 4 | 3.50 | -3.25 | 4.75 | 4.00 | 2.25 | 4.36 | 4.00 | 0.00 | 4.25 | 4.00 | 4.25 | 2.50 | 0.00 | 1.00 | 0.50 |
m 5 | 4.00 | -4.00 | 6.50 | 4.50 | 3.00 | 4.00 | 7.11 | 0.00 | 5.00 | 4.50 | 5.00 | 3.50 | 0.00 | 1.00 | 0.00 |
m 6 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
m 7 | 4.50 | -4.25 | 5.75 | 5.00 | 2.25 | 4.25 | 5.00 | 0.00 | 7.36 | 5.00 | 6.25 | 3.50 | 0.00 | 1.00 | 0.50 |
m 8 | 4.50 | -4.00 | 5.75 | 5.25 | 3.00 | 4.00 | 4.50 | 0.00 | 5.00 | 6.36 | 5.00 | 2.75 | 0.00 | 1.50 | 1.00 |
m 9 | 4.50 | -4.25 | 5.75 | 5.00 | 2.25 | 4.25 | 5.00 | 0.00 | 6.25 | 5.00 | 7.36 | 3.50 | 0.00 | 1.00 | 0.50 |
m 10 | 2.50 | -2.50 | 3.75 | 2.75 | 1.50 | 2.50 | 3.50 | 0.00 | 3.50 | 2.75 | 3.50 | 3.36 | 0.00 | 0.50 | 0.00 |
ε 3 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.17 | 0.00 | -0.11 |
ε 5 | 1.00 | -1.00 | 1.50 | 1.50 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.50 | 1.00 | 0.50 | 0.00 | 1.22 | 0.00 |
ε 6 | 1.00 | -0.50 | 0.50 | 1.00 | 0.50 | 0.50 | 0.00 | 0.00 | 0.50 | 1.00 | 0.50 | 0.00 | -0.11 | 0.00 | 1.22 |
rhs | 3.94 | -4.04 | 5.93 | 4.91 | 2.75 | 4.04 | 5.06 | 0.00 | 5.34 | 4.91 | 5.34 | 3.18 | -0.34 | 1.27 | 0.46 |
sol | -0.34 | -1.61 | -0.01 | -0.00 | -0.01 | -0.00 | -0.01 | 0.00 | 0.01 | -0.00 | 0.01 | 0.00 | -0.00 | 0.00 | -0.01 |