| | |
Off0
|
Off1
|
Off2
|
Off4
|
|---|
|
Category
|
n
|
rsegregation
|
rphased
|
rsegregation
|
rphased
|
rsegregation
|
rphased
|
rsegregation
|
rphased
|
|---|
|
Both parents
|
25
|
0.70
|
0.66
|
0.78
|
0.78
|
0.84
|
0.83
|
0.93
|
0.94
|
|
SireMGS
|
756
|
0.57
|
0.54
|
0.73
|
0.68
|
0.82
|
0.77
|
0.92
|
0.88
|
|
DamPGS
|
0
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
|
Sire
|
15
|
0.50
|
0.48
|
0.69
|
0.68
|
0.80
|
0.78
|
0.93
|
0.87
|
|
Dam
|
0
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
|
Other
|
9
|
0.13
|
0.13
|
0.61
|
0.61
|
0.77
|
0.77
|
0.91
|
0.91
|
|
Total1
|
805
|
0.57
|
0.54
|
0.73
|
0.68
|
0.82
|
0.77
|
0.92
|
0.88
|
|
runcorrected2
|
805
|
0.83
|
0.81
|
0.88
|
0.86
|
0.92
|
0.89
|
0.96
|
0.95
|
- Results from both AlphaImpute with phasing (phased) and only segregation analysis (segregation) are reported; average imputation accuracies were split into categories of the closest recent ancestor genotyped and calculated over 10 replications; 1for AlphaImpute phased, the standard deviations for Total were 0.16, 0.13, 0.13, and 0.10 for scenarios Off0, Off1, Off2, and Off4, respectively; for segregation analyses, the standard deviations for Total were 0.12, 0.07, 0.07, and 0.05 for scenarios Off0, Off1, Off2, and Off4, respectively; 2mean of imputation accuracy calculated as the correlation between true genotypes and imputed genotype dosages, both uncorrected for the mean gene content.
