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Table 2 Locus information

From: Molecular phylogeny of Salmo of the western Balkans, based upon multiple nuclear loci

Locus

Genbank accession numbers

jModeltest BIC

MrModeltest AIC

Ktreedist

GP1

HM066793, HM066804-HM066818, HM635370-HM635372, KG699502-KG699507

TrN

GTR

0.04589

GP4

HM066821, HM066825, HM635375-HM635376, KG699508-KG699509

F81

F81

0.04593

GP5

HM066826-HM066827, HM066830-HM066832, HM635378-HM635379

JC

HKY

0.04555

GP14

HM635380-HM635384

JC

F81

0.03149

GP16

HM066835, HM066841-HM066842, HM635386, KG699510-KG699511

F81

F81

0.04473

GP31

HM066845-HM066846, HM635387, KG699512-KG699513

K80 + G

HKY

0.02257

GP34

HM066852-HM066861, HM635389-HM635391, KG699514-KG699515

HKY

HKY + I

0.04559

GP37

HM066863, HM066869-HM066873, KG699516-KG699518

HKY

HKY

0.04048

GP38

HM066880, HM066882, HM635392-HM635393, KG699519-KG699520

JC

JC

0.04485

GP42

HM066884-HM066885, HM066888-HM066890, HM635395, KG699521-KG699523

F81

F81

0.04562

GP73

HM066893, HM066898-HM066901, HM635396KG699525

F81 + G

F81

0.04062

GP81

HM635402, HM635405-HM635409, HM635411-HM635412, KG699526

F81 + G

F81

0.04583

GP85

HM066916-HM066925, HM635415-HM635418, KG699527-KG699533

F81

GTR + G

0.04133

GP94

HM066928-HM066934, HM635420, KG699534-KG699536

F81

HKY + I

0.04585

HMG1

HM066734, HM066737, HM635469, KG699537-KG699541

F81

HKY + I

0.02706

SS2

HM066740-HM066745, HM635458-HM635460, KG699542

F81

HKY + I

0.04591

TFGB-beta

HM066759, HM066761-HM066765, HM635472-HM635473, KG699543

TIMef

F81 + I

0.02028

tnfa

HM066769, HM066781-HM066784, HM635474-HM635476, KG699544-KG699547

TrN + G

HKY + I

0.02342

RH

HM635423, HM635425-HM635430, HM635432-HM635433, KG699548-KG699549

F81

F81

0.04299

SILVA

HM635434-HM635435, HM635437, HM635440-HM635444, HM635446, KG699550-KG699553

JC

HKY

0.04580

SL

HM635451, HM635455-HM635457, KG699554-KG699560

JC

GTR + I

0.03979

TF

HM635463-HM635467, HM635469-HM635470, KG699561-KG699562

JC

HKY

0.02376

  1. Locus name, GenBank accession numbers of amplified sequences, nucleotide substitution model for each partition (locus) and differences between gene trees and species tree (Ktreedist).