Table 1 The mean proportion of correctly imputed genotypes, as calculated in the within-population analysis of the UK dataset
From: The utility of low-density genotyping for imputation in the Thoroughbred horse
Number of SNPs1 | bpEQ | bpMAF | lduMAF |
|---|---|---|---|
Per individual | |||
384 | 0.66 (0.52,0.93) | 0.67 (0.55,0.94) | 0.69 (0.55,0.92) |
768 | 0.76 (0.59,0.94) | 0.77 (0.62,0.95) | 0.78 (0.59,0.96) |
1K | 0.79 (0.61,0.94) | 0.84 (0.66,0.97) | 0.83 (0.64,0.98) |
2K | 0.90 (0.70,0.99) | 0.91 (0.71,0.99) | 0.89 (0.68,0.99) |
3K | 0.94 (0.70,0.99) | 0.95 (0.73,1.00) | 0.92 (0.67,0.99) |
6K | 0.97 (0.79,1.00) | 0.98 (0.78,1.00) | 0.95 (0.75,1.00) |
Per SNP | |||
384 | 0.66 (0.30,1.00) | 0.67 (0.30,1.00) | 0.69 (0.36,1.00) |
768 | 0.76 (0.37,1.00) | 0.77 (0.44,1.00) | 0.78 (0.50,1.00) |
1K | 0.79 (0.44,1.00) | 0.84 (0.50,1.00) | 0.83 (0.53,1.00) |
2K | 0.90 (0.56,1.00) | 0.91 (0.63,1.00) | 0.89 (0.53,1.00) |
3K | 0.94 (0.68,1.00) | 0.95 (0.72,1.00) | 0.92 (0.66,1.00) |
6K | 0.97 (0.79,1.00) | 0.98 (0.83,1.00) | 0.95 (0.72,1.00) |