Table 2 Properties of low density panel SNPs, as calculated in the within-population analysis of the UK dataset
From: The utility of low-density genotyping for imputation in the Thoroughbred horse
Number of SNPs1 | Method | Mean (SD) MAF | Mean (SD) distance between SNPs (Mb) |
|---|---|---|---|
384 | bpEQ | 0.22 (0.13) | 6.40 (0.09) |
| Â | bpMAF | 0.25 (0.10) | 6.40 (0.66) |
| Â | lduMAF | 0.44 (0.06) | 6.40 (2.41) |
768 | bpEQ | 0.25 (0.15) | 3.14 (0.09) |
| Â | bpMAF | 0.31 (0.13) | 3.14 (0.57) |
| Â | lduMAF | 0.45 (0.04) | 3.14 (1.65) |
1K | bpEQ | 0.22 (0.14) | 2.41 (0.07) |
| Â | bpMAF | 0.39 (0.08) | 2.38 (0.61) |
| Â | lduMAF | 0.45 (0.04) | 2.38 (1.42) |
2K | bpEQ | 0.23 (0.14) | 1.19 (0.06) |
| Â | bpMAF | 0.28 (0.11) | 1.19 (0.30) |
| Â | lduMAF | 0.46 (0.04) | 1.19 (1.19) |
3K | bpEQ | 0.23 (0.14) | 0.79 (0.06) |
| Â | bpMAF | 0.30 (0.12) | 0.79 (0.23) |
| Â | lduMAF | 0.46 (0.03) | 0.79 (0.92) |
6K | bpEQ | 0.23 (0.14) | 0.39 (0.07) |
| Â | bpMAF | 0.29 (0.11) | 0.39 (0.17) |
| Â | lduMAF | 0.43 (0.05) | 0.39 (0.63) |