From: The utility of low-density genotyping for imputation in the Thoroughbred horse
Chr | Imputation method | LDP SNP selection method | UK within-population assessmenta | Between-population assessment 1b | Between-population assessment 2c |
---|---|---|---|---|---|
ECA1 | Randomd | bpEQ | 0.55 | 0.55 | 0.56 |
bpMAF | 0.55 | 0.55 | 0.56 | ||
lduMAF | 0.56 | 0.56 | 0.57 | ||
Beaglee | bpEQ | 0.90 | 0.90 | 0.92 | |
bpMAF | 0.91 | 0.91 | 0.93 | ||
lduMAF | 0.89 | 0.89 | 0.92 | ||
ECA26 | Randomf | bpEQ | 0.51 | 0.50 | 0.51 |
bpMAF | 0.52 | 0.51 | 0.51 | ||
lduMAF | 0.52 | 0.51 | 0.51 | ||
Beagleg | bpEQ | 0.82 | 0.81 | 0.86 | |
bpMAF | 0.85 | 0.84 | 0.89 | ||
lduMAF | 0.88 | 0.85 | 0.90 |