TY - JOUR AU - Johansson, I. PY - 1960 DA - 1960// TI - Progeny testing methods in Europe JO - J Dairy Sci VL - 43 UR - https://doi.org/10.3168/jds.S0022-0302(60)90223-X DO - 10.3168/jds.S0022-0302(60)90223-X ID - Johansson1960 ER - TY - JOUR AU - Neimann-Sorensen, A. AU - Robertson, A. PY - 1961 DA - 1961// TI - The association between blood groups and several production characteristics in three Danish cattle breeds JO - Acta Agric Scand VL - 11 UR - https://doi.org/10.1080/00015126109433054 DO - 10.1080/00015126109433054 ID - Neimann-Sorensen1961 ER - TY - JOUR AU - Meuwissen, T. H. E. AU - Hayes, B. J. AU - Goddard, M. E. PY - 2001 DA - 2001// TI - Prediction of total genetic value using genome-wide dense marker maps JO - Genetics VL - 157 ID - Meuwissen2001 ER - TY - JOUR AU - Berry, D. P. AU - Kearney, F. AU - Harris, B. L. PY - 2009 DA - 2009// TI - Genomic selection in Ireland JO - Interbull Bull VL - 39 ID - Berry2009 ER - TY - JOUR AU - De Roos, A. P. W. AU - Schrooten, C. AU - Mullaart, E. AU - Van der Beek, S. AU - De Jong, G. AU - Voskamp, W. PY - 2009 DA - 2009// TI - Genomic selection at CRV JO - Interbull Bull VL - 39 ID - De Roos2009 ER - TY - JOUR AU - Ducrocq, V. AU - Fritz, S. AU - Guillaume, F. AU - Boichard, D. PY - 2009 DA - 2009// TI - French report on the use of genomic evaluation JO - Interbull Bull VL - 39 ID - Ducrocq2009 ER - TY - CHAP AU - Wiggans, G. R. AU - Sonstegard, T. S. AU - VanRaden, P. M. AU - Matukumalli, L. K. AU - Schnabel, R. D. AU - Taylor, J. F. AU - Chesnais, J. P. AU - Schenkel, F. S. AU - Van Tassel, C. P. ED - Sattler, J. D. PY - 2008 DA - 2008// TI - Genomic Evaluations in the United States and Canada: A Collaboration BT - Proceedings of International Commitee of Animal Recording; 16-20 June; Niagara Falls PB - ICAR CY - Rome ID - Wiggans2008 ER - TY - JOUR AU - Loberg, A. AU - Dürr, J. W. PY - 2009 DA - 2009// TI - Interbull survey on the use of genomic information JO - Interbull Bull VL - 39 ID - Loberg2009 ER - TY - JOUR AU - Sellner, E. M. AU - Kim, J. W. AU - McClure, M. C. AU - Taylor, K. H. AU - Schnabel, R. D. AU - Taylor, J. F. PY - 2007 DA - 2007// TI - Board-invited review: applications of genomic information in livestock JO - J Anim Sci VL - 85 UR - https://doi.org/10.2527/jas.2007-0291 DO - 10.2527/jas.2007-0291 ID - Sellner2007 ER - TY - JOUR AU - McVean, G. PY - 2009 DA - 2009// TI - A genealogical interpretation of principal components analysis JO - PLoS Genet VL - 5 UR - https://doi.org/10.1371/journal.pgen.1000686 DO - 10.1371/journal.pgen.1000686 ID - McVean2009 ER - TY - JOUR AU - Novembre, J. AU - Stephens, M. PY - 2008 DA - 2008// TI - Interpreting principal component analyses of spatial population genetic variation JO - Nat Genet VL - 40 UR - https://doi.org/10.1038/ng.139 DO - 10.1038/ng.139 ID - Novembre2008 ER - TY - JOUR AU - Paschou, P. AU - Drineas, P. AU - Lewis, J. AU - Nievergelt, C. M. AU - Nickerson, D. A. AU - Smith, J. D. AU - Ridker, P. M. AU - Chasman, D. I. AU - Krauss, R. M. AU - Ziv, E. PY - 2008 DA - 2008// TI - Tracing sub-structure in the European American population with PCA-informative markers JO - PLoS Genet VL - 4 UR - https://doi.org/10.1371/journal.pgen.1000114 DO - 10.1371/journal.pgen.1000114 ID - Paschou2008 ER - TY - JOUR AU - Patterson, N. AU - Price, A. L. AU - Reich, D. PY - 2006 DA - 2006// TI - Population structure and eigenanalysis JO - PLoS Genet VL - 2 UR - https://doi.org/10.1371/journal.pgen.0020190 DO - 10.1371/journal.pgen.0020190 ID - Patterson2006 ER - TY - JOUR AU - Price, A. L. AU - Patterson, N. J. AU - Plenge, R. M. AU - Weinblatt, M. E. AU - Shadick, N. A. AU - Reich, D. PY - 2006 DA - 2006// TI - Principal components analysis corrects for stratification in genome-wide association studies JO - Nat Genet VL - 38 UR - https://doi.org/10.1038/ng1847 DO - 10.1038/ng1847 ID - Price2006 ER - TY - JOUR AU - Reich, D. AU - Price, A. L. AU - Patterson, N. PY - 2008 DA - 2008// TI - Principal component analysis of genetic data JO - Nat Genet VL - 40 UR - https://doi.org/10.1038/ng0508-491 DO - 10.1038/ng0508-491 ID - Reich2008 ER - TY - JOUR AU - Menozzi, P. AU - Piazza, A. AU - Cavalli-Sforza, L. PY - 1978 DA - 1978// TI - Synthetic maps of human gene frequencies in Europeans JO - Science VL - 201 UR - https://doi.org/10.1126/science.356262 DO - 10.1126/science.356262 ID - Menozzi1978 ER - TY - JOUR AU - Lewis, J. AU - Abas, Z. AU - Dadousis, C. AU - Lykidis, D. AU - Paschou, P. AU - Drineas, P. PY - 2011 DA - 2011// TI - Tracing cattle breeds with principal components analysis ancestry informative SNPs JO - PLoS ONE VL - 6 UR - https://doi.org/10.1371/journal.pone.0018007 DO - 10.1371/journal.pone.0018007 ID - Lewis2011 ER - TY - JOUR AU - Dimauro, C. AU - Cellesi, M. AU - Pintus, M. A. AU - Macciotta, N. P. P. PY - 2011 DA - 2011// TI - The impact of the rank of marker variance–covariance matrix in principal component evaluation for genomic selection applications JO - J Anim Breed Genet VL - 128 UR - https://doi.org/10.1111/j.1439-0388.2011.00957.x DO - 10.1111/j.1439-0388.2011.00957.x ID - Dimauro2011 ER - TY - JOUR AU - Macciotta, N. P. P. AU - Gaspa, G. AU - Steri, R. AU - Nicolazzi, E. L. AU - Dimauro, C. AU - Pieramati, C. AU - Cappio-Borlino, A. PY - 2010 DA - 2010// TI - Using eigenvalues as variance priors in the prediction of genomic breeding values by principal component analysis JO - J Dairy Sci VL - 93 UR - https://doi.org/10.3168/jds.2009-3029 DO - 10.3168/jds.2009-3029 ID - Macciotta2010 ER - TY - JOUR AU - Pintus, M. A. AU - Gaspa, G. AU - Nicolazzi, E. L. AU - Vicario, D. AU - Rossoni, A. AU - Ajmone-Marsan, P. AU - Nardone, A. AU - Dimauro, C. AU - Macciotta, N. P. P. PY - 2012 DA - 2012// TI - Prediction of genomic breeding values for dairy traits in Italian Brown and Simmental bulls using a principal component approach JO - J Dairy Sci VL - 95 UR - https://doi.org/10.3168/jds.2011-4274 DO - 10.3168/jds.2011-4274 ID - Pintus2012 ER - TY - JOUR AU - Solberg, T. R. AU - Sonesson, A. K. AU - Woolliams, J. A. AU - Meuwissen, T. H. E. PY - 2009 DA - 2009// TI - Reducing dimensionality for prediction of genome-wide breeding values JO - Genet Sel Evol VL - 41 UR - https://doi.org/10.1186/1297-9686-41-29 DO - 10.1186/1297-9686-41-29 ID - Solberg2009 ER - TY - JOUR AU - Daetwyler, H. D. AU - Kemper, K. E. AU - van der Werf, J. H. J. AU - Hayes, B. J. PY - 2012 DA - 2012// TI - Components of the accuracy of genomic prediction in a multi-breed sheep population JO - J Anim Sci VL - 90 UR - https://doi.org/10.2527/jas.2011-4557 DO - 10.2527/jas.2011-4557 ID - Daetwyler2012 ER - TY - JOUR AU - VanRaden, P. M. PY - 2008 DA - 2008// TI - Efficient methods to compute genomic predictions JO - J Dairy Sci VL - 91 UR - https://doi.org/10.3168/jds.2007-0980 DO - 10.3168/jds.2007-0980 ID - VanRaden2008 ER - TY - JOUR AU - Banos, G. AU - Coffey, M. P. PY - 2010 DA - 2010// TI - Short communication: Characterization of the genome-wide linkage disequilibrium in 2 divergent selection lines of dairy cows JO - J Dairy Sci VL - 93 UR - https://doi.org/10.3168/jds.2009-2613 DO - 10.3168/jds.2009-2613 ID - Banos2010 ER - TY - JOUR AU - Veerkamp, R. F. AU - Coffey, M. P. AU - Berry, D. P. AU - de Haas, Y. AU - Strandberg, E. AU - Bovenhuis, H. AU - Calus, M. P. L. AU - Wall, E. PY - 2012 DA - 2012// TI - Genome-wide associations for feed utilisation complex in primiparous Holstein–Friesian dairy cows from experimental research herds in four European countries JO - Animal VL - 6 UR - https://doi.org/10.1017/S1751731112001152 DO - 10.1017/S1751731112001152 ID - Veerkamp2012 ER - TY - BOOK AU - Diamantaras, K. I. AU - Kung, S. Y. PY - 1996 DA - 1996// TI - Principal Component Neural Networks: Theory and Applications PB - Wiley CY - New York ID - Diamantaras1996 ER - TY - JOUR AU - Hotelling, H. PY - 1957 DA - 1957// TI - The relations of the newer multivariate statistical methods to factor analysis JO - Br J Stat Psych VL - 10 UR - https://doi.org/10.1111/j.2044-8317.1957.tb00179.x DO - 10.1111/j.2044-8317.1957.tb00179.x ID - Hotelling1957 ER - TY - JOUR AU - Jeffers, J. N. R. PY - 1967 DA - 1967// TI - Two case studies in the application of principal component analysis JO - J R Stat Soc Series C (Appl Stat) VL - 16 ID - Jeffers1967 ER - TY - STD TI - R Development Core Team: R: A Language And Environment For Statistical Computing; [], [http://www.R-project.org/] UR - http://www.R-project.org/ ID - ref29 ER - TY - JOUR AU - de los Campos, G. AU - Hickey, J. M. AU - Pong-Wong, R. AU - Daetwyler, H. D. AU - Calus, M. P. L. PY - 2013 DA - 2013// TI - Whole-genome regression and prediction methods applied to plant and animal breeding JO - Genetics VL - 193 UR - https://doi.org/10.1534/genetics.112.143313 DO - 10.1534/genetics.112.143313 ID - de los Campos2013 ER - TY - CHAP AU - Roli, F. AU - Marcialis, G. L. ED - Yeung, D. K. J. ED - Fred, A. ED - Roli, F. ED - Ridder, D. PY - 2006 DA - 2006// TI - Semi-Supervised PCA-Based Face Recognition Using Self-Training BT - Structural, Syntactic, and Statistical Pattern Recognition PB - Springer CY - Berlin Heidelberg UR - https://doi.org/10.1007/11815921_61 DO - 10.1007/11815921_61 ID - Roli2006 ER - TY - CHAP AU - Yu, S. AU - Yu, K. AU - Tresp, V. AU - Kriegel, H. -. P. AU - Wu, M. PY - 2006 DA - 2006// TI - Supervised Probabilistic Principal Component Analysis BT - Proceedings of the 12th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining; Philadelphia UR - https://doi.org/10.1145/1150402.1150454 DO - 10.1145/1150402.1150454 ID - Yu2006 ER - TY - BOOK AU - Jolliffe, I. T. PY - 2002 DA - 2002// TI - Principal Component Analysis PB - Springer New York CY - New York ID - Jolliffe2002 ER - TY - JOUR AU - Krämer, N. AU - Sugiyama, M. PY - 2011 DA - 2011// TI - The degrees of freedom of partial least squares regression JO - J Am Stat Assoc VL - 106 UR - https://doi.org/10.1198/jasa.2011.tm10107 DO - 10.1198/jasa.2011.tm10107 ID - Krämer2011 ER - TY - BOOK AU - Butler, D. AU - Cullis, B. AU - Gilmour, A. AU - Gogel, D. PY - 2009 DA - 2009// TI - ASReml-R reference Manual Release 3.0 PB - VSN International Ltd CY - Hemel Hempstead ID - Butler2009 ER - TY - JOUR AU - Calus, M. P. L. AU - de Haas, Y. AU - Veerkamp, R. F. PY - 2013 DA - 2013// TI - Combining cow and bull reference populations to increase accuracy of genomic prediction and genome-wide association studies JO - J Dairy Sci VL - 96 UR - https://doi.org/10.3168/jds.2012-6013 DO - 10.3168/jds.2012-6013 ID - Calus2013 ER - TY - JOUR AU - Yang, J. AU - Benyamin, B. AU - McEvoy, B. P. AU - Gordon, S. AU - Henders, A. K. AU - Nyholt, D. R. AU - Madden, P. A. AU - Heath, A. C. AU - Martin, N. G. AU - Montgomery, G. W. AU - Goddard, M. E. AU - Visscher, P. M. PY - 2010 DA - 2010// TI - Common SNPs explain a large proportion of the heritability for human height JO - Nat Genet VL - 42 UR - https://doi.org/10.1038/ng.608 DO - 10.1038/ng.608 ID - Yang2010 ER - TY - JOUR AU - Pszczola, M. AU - Strabel, T. AU - Mulder, H. A. AU - Calus, M. P. L. PY - 2012 DA - 2012// TI - Reliability of direct genomic values for animals with different relationships within and to the reference population JO - J Dairy Sci VL - 95 UR - https://doi.org/10.3168/jds.2011-4338 DO - 10.3168/jds.2011-4338 ID - Pszczola2012 ER - TY - JOUR AU - Clark, S. A. AU - Hickey, J. M. AU - Daetwyler, H. D. AU - van der Werf, J. H. J. PY - 2012 DA - 2012// TI - The importance of information on relatives for the prediction of genomic breeding values and the implications for the makeup of reference data sets in livestock breeding schemes JO - Genet Sel Evol VL - 44 UR - https://doi.org/10.1186/1297-9686-44-4 DO - 10.1186/1297-9686-44-4 ID - Clark2012 ER - TY - JOUR AU - de Haas, Y. AU - Calus, M. P. L. AU - Veerkamp, R. F. AU - Wall, E. AU - Coffey, M. P. AU - Daetwyler, H. D. AU - Hayes, B. J. AU - Pryce, J. E. PY - 2012 DA - 2012// TI - Improved accuracy of genomic prediction for dry matter intake of dairy cattle from combined European and Australian data sets JO - J Dairy Sci VL - 95 UR - https://doi.org/10.3168/jds.2011-5280 DO - 10.3168/jds.2011-5280 ID - de Haas2012 ER - TY - JOUR AU - Pszczola, M. AU - Strabel, T. AU - van Arendonk, J. A. M. AU - Calus, M. P. L. PY - 2012 DA - 2012// TI - The impact of genotyping different groups of animals on accuracy when moving from traditional to genomic selection JO - J Dairy Sci VL - 95 UR - https://doi.org/10.3168/jds.2012-5550 DO - 10.3168/jds.2012-5550 ID - Pszczola2012 ER - TY - JOUR AU - Hayes, B. J. AU - Bowman, P. J. AU - Chamberlain, A. C. AU - Verbyla, K. AU - Goddard, M. E. PY - 2009 DA - 2009// TI - Accuracy of genomic breeding values in multi-breed dairy cattle populations JO - Genet Sel Evol VL - 41 UR - https://doi.org/10.1186/1297-9686-41-51 DO - 10.1186/1297-9686-41-51 ID - Hayes2009 ER - TY - JOUR AU - Pryce, J. E. AU - Gredler, B. AU - Bolormaa, S. AU - Bowman, P. J. AU - Egger-Danner, C. AU - Fuerst, C. AU - Emmerling, R. AU - Solkner, J. AU - Goddard, M. E. AU - Hayes, B. J. PY - 2011 DA - 2011// TI - Short communication: genomic selection using a multi-breed, across-country reference population JO - J Dairy Sci VL - 94 UR - https://doi.org/10.3168/jds.2010-3719 DO - 10.3168/jds.2010-3719 ID - Pryce2011 ER - TY - JOUR AU - Boneh, S. AU - Mendieta, G. R. PY - 1994 DA - 1994// TI - Variable selection in regression models using principal components JO - Comm Stat Theor Meth VL - 23 UR - https://doi.org/10.1080/03610929408831247 DO - 10.1080/03610929408831247 ID - Boneh1994 ER - TY - JOUR AU - Hawkins, D. M. PY - 1973 DA - 1973// TI - On the investigation of alternative regressions by principal component analysis JO - J R Stat Soc Series C (Appl Stat) VL - 22 ID - Hawkins1973 ER - TY - JOUR AU - Jolliffe, I. T. PY - 1982 DA - 1982// TI - A note on the use of principal components in regression JO - J R Stat Soc Series C (Appl Stat) VL - 31 ID - Jolliffe1982 ER - TY - JOUR AU - Hadi, A. S. AU - Ling, R. F. PY - 1998 DA - 1998// TI - Some cautionary notes on the use of principal components regression JO - Am Stat VL - 52 ID - Hadi1998 ER - TY - JOUR AU - Long, N. AU - Gianola, D. AU - Rosa, G. J. M. AU - Weigel, K. A. PY - 2011 DA - 2011// TI - Dimension reduction and variable selection for genomic selection: application to predicting milk yield in Holsteins JO - J Anim Breed Genet VL - 128 UR - https://doi.org/10.1111/j.1439-0388.2011.00917.x DO - 10.1111/j.1439-0388.2011.00917.x ID - Long2011 ER - TY - JOUR AU - Schölkopf, B. AU - Smola, A. AU - Müller, K. -. R. PY - 1998 DA - 1998// TI - Nonlinear component analysis as a kernel eigenvalue problem JO - Neural Comput VL - 10 UR - https://doi.org/10.1162/089976698300017467 DO - 10.1162/089976698300017467 ID - Schölkopf1998 ER - TY - JOUR AU - Gianola, D. AU - Fernando, R. L. AU - Stella, A. PY - 2006 DA - 2006// TI - Genomic-assisted prediction of genetic value with semiparametric procedures JO - Genetics VL - 173 UR - https://doi.org/10.1534/genetics.105.049510 DO - 10.1534/genetics.105.049510 ID - Gianola2006 ER - TY - JOUR AU - Tipping, M. E. AU - Bishop, C. M. PY - 1999 DA - 1999// TI - Probabilistic principal component analysis JO - J Roy Stat Soc B VL - 61 UR - https://doi.org/10.1111/1467-9868.00196 DO - 10.1111/1467-9868.00196 ID - Tipping1999 ER - TY - JOUR AU - Kim, B. AU - Kwon, M. J. PY - 2008 DA - 2008// TI - Optimization of principal-component-analysis-applied in situ spectroscopy data using neural networks and genetic algorithms JO - Appl Spectrosc VL - 62 UR - https://doi.org/10.1366/000370208783412717 DO - 10.1366/000370208783412717 ID - Kim2008 ER - TY - JOUR AU - Jombart, T. AU - Pontier, D. AU - Dufour, A. B. PY - 2009 DA - 2009// TI - Genetic markers in the playground of multivariate analysis JO - Heredity VL - 102 UR - https://doi.org/10.1038/hdy.2008.130 DO - 10.1038/hdy.2008.130 ID - Jombart2009 ER -