Accuracy of genotype imputation in Nelore cattle

Table 5 Average (standard deviation) imputation accuracy, using FImpute with or without pedigree (Ped) information

Analyses¹	SNP chip²	With Ped	Without Ped
1 and 13	7 K	0.9257 (0.0346)	0.9164 (0.0351)
2 and 14	50 K	0.9783 (0.0136)	0.9781 (0.0132)
8 and 15	15K_eml	0.9840 (0.0107)	0.9832 (0.0113)
9 and 16	11a7 K	0.9823 (0.0117)	0.9819 (0.0120)

¹Imputation analyses using FImpute software and 202 younger sires as the validation set; the numbers of each analysis refer to those in brackets from Figure 1; the first and the second numbers refer to analyses with and without pedigree information, respectively; ²as described in the section ¿SNP chips¿ of ¿Methods¿.

ISSN: 1297-9686