Detecting inbreeding depression for reproductive traits in Iberian pigs using genome-wide data

Table 1 Mean, standard deviation (SD) and range (Min, Max) of pedigree and SNP-derived inbreeding coefficients

	Mean	SD	Min	Max
F _ped	0.390	0.037	0.332	0.497
F _{snp_r}	0.868	0.011	0.845	0.910
F _snp	−0.046	0.091	−0.463	0.251
F _roh	0.453	0.048	0.337	0.629
F _{roh_short}	0.111	0.014	0.081	0.198
F _{roh_long}	0.342	0.056	0.162	0.535

F _ped = pedigree-based inbreeding; F _{snp_r} = genomic SNP-by-SNP inbreeding estimated as the proportion of homozygous genotypes; F _snp = genomic SNP-by-SNP inbreeding based on the excess of SNP homozygosity; F _roh = genomic inbreeding based on all ROH; F _{roh_short} = genomic inbreeding based on short ROH; F _{roh_long} = genomic inbreeding based on long ROH.

ISSN: 1297-9686