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Table 4 Estimates of inbreeding depression for different regions of SSC13 for NBA and TNB

From: Detecting inbreeding depression for reproductive traits in Iberian pigs using genome-wide data

Region

Region

position

NBA

TNB

Start (Mb)

End (Mb)

Mean (SE)

p value

Mean (SE)

p value

SSC13 divided in three segments

I

0.09

72.92

−0.138 (0.039)

0.0004***

−0.144 (0.041)

0.0004***

II

72.98

145.73

−0.035 (0.028)

0.2053

−0.033 (0.029)

0.2526

III

145.77

218.59

−0.040 (0.038)

0.2915

−0.032 (0.040)

0.4190

SSC13 divided in five segments

I

0.09

43.77

−0.131 (0.041)

0.0013**

−0.135 (0.043)

0.0016**

II

43.88

87.38

−0.066 (0.025)

0.0092**

−0.071 (0.026)

0.0070**

III

87.58

131.18

−0.039 (0.023)

0.0859

−0.038 (0.023)

0.1071

IV

131.20

174.85

−0.031 (0.036)

0.3900

−0.016 (0.038)

0.6669

V

175.01

218.59

−0.019 (0.035)

0.5749

−0.020 (0.036)

0.5914

SSC13 divided in eight segments

I

0.09

27.35

−0.046 (0.046)

0.3138

−0.077 (0.043)

0.1115

II

27.45

54.66

−0.072 (0.020)

0.0003**

−0.064 (0.020)

0.0017**

III

54.77

82.03

−0.029 (0.020)

0.1479

−0.039 (0.020)

0.0560

IV

82.03

109.17

−0.028 (0.022)

0.1967

−0.024 (0.023)

0.2901

V

109.42

136.65

−0.033 (0.023)

0.1431

−0.036 (0.024)

0.1220

VI

136.69

163.96

−0.022 (0.037)

0.5506

−0.005 (0.038)

0.9016

VII

164.33

191.28

−0.035 (0.023)

0.1297

−0.036 (0.024)

0.1252

VIII

191.36

218.59

0.003 (0.027)

0.8038

0.006 (0.028)

0.8277

  1. NBA = number of piglets born alive; TNB = total number of piglets born; results are expressed as the change in phenotypic mean per 10% increase in F snp ; significant values are indicated with asterisk (**p < 0.01, ***p < 0.001).