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Table 3 Total error rate, false positive and false negative rate for the prediction of haplotype carriers in the training and testing sets using the bovine LD (7k) SNP-chip

From: Predicting haplotype carriers from SNP genotypes in Bos taurus through linear discriminant analysis

LD-chip

Training set

Testing set

# SNPs

TER

FPR

FNR

TER

FPR

FNR

5

1.55

1.33

2.91

1.59

1.36

3.03

21

0.84

0.69

1.73

0.94

0.79

1.87

31

0.71

0.57

1.57

0.83

0.68

1.77

62

0.59

0.46

1.38

0.81

0.66

1.72

104

0.52

0.40

1.29

0.78

0.61

1.81

207

0.50

0.37

1.27

0.75

0.57

1.82

  1. Results are averages over 6000 cross-validation replicates (10 folds, 6 proportions, 100 repetitions). TER: total error rate; FPR: false positive rate; FNR: false negative rate.
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Genetics Selection Evolution

ISSN: 1297-9686