Table 4 Total error rate, false positive and false negative rate for the prediction of haplotype carriers in the training and testing sets using the bovine 54k SNP-chip
From: Predicting haplotype carriers from SNP genotypes in Bos taurus through linear discriminant analysis
54K-chip | Training set | Testing set | ||||
|---|---|---|---|---|---|---|
# SNPs | TER | FPR | FNR | TER | FPR | FNR |
17 | 0.38 | 0.41 | 0.20 | 0.46 | 0.48 | 0.28 |
70 | 0.28 | 0.32 | 0.00 | 0.39 | 0.43 | 0.13 |
105 | 0.27 | 0.32 | 0.00 | 0.38 | 0.42 | 0.15 |
210 | 0.24 | 0.28 | 0.00 | 0.40 | 0.44 | 0.17 |
350 | 0.21 | 0.25 | 0.00 | 0.41 | 0.45 | 0.19 |
699 | 0.20 | 0.24 | 0.00 | 0.44 | 0.47 | 0.28 |