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Table 4 rEHH values in the candidate gene regions studied in [2]

From: Relative extended haplotype homozygosity signals across breeds reveal dairy and beef specific signatures of selection

   

Holstein

Brown

Simmental

Cand gene

BTA

Closest SNP (bp)

CH range

CH freq

rEHH-log(p)

CH range

CH freq

rEHH-log(p)

CH range

CH freq

rEHH-log(p)

DGAT1

14

444 963

236 653–443 936

H1:0.57

-/0.11

443 936–763 332

H1:0.42

0.13/0.007

-

-

-

Casein cluster

6

88 391 612

88 350 098–88 452 835

H1:0.46

1.48*/1.33*

88 326 012–88 452 835

H2:0.68

0.80/1.09

88 350 098–88 452 835

H1:0.44

0.37/0.22

   

88 350 098–88 452 835

H2:0.33

0.18/0.30

-

-

-

-

-

-

   

-

-

-

-

-

-

88 350 098–88 452 835

H3:0.34

0.22/0.45

GH

19

49 652 377

-

-

-

-

-

-

-

-

-

GHR

20

33 908 597

-

-

-

-

-

-

-

-

-

SST

1

81 376 956

81 283 585–81 376 961

H1:0.36

2.00**/1.89**

-

-

-

81 318 451–81 376 961

H1:0.42

1.26/0.53

   

81 283 585–81 376 961

H2:0.29

0.063/0.084

-

-

-

81 318 451–81 376 961

H2:0.42

0.06/0.27

IGF-1

5

71 169 823

-

-

-

-

-

-

-

-

-

ABCG2

6

37 374 911

-

-

-

37 317 020–38 256 889

H1:0.44

0.31/0.27

-

-

-

   

-

-

-

37 317 020–38 256 889

H1:0.40

0.29/0.31

-

-

-

Leptin

4

95 715 500

-

-

-

-

-

-

-

-

-

LPR

3

85 569 203

85 497 108–85 594 551

H1:0.47

0.91/0.72

85 497 108–85 794 693

H1:0.68

0.80/0.63

85 497 108–85 794 693

H1:0.63

0.02/0.05

   

85 497 108–85 594 551

H2:0.41

0.27/0.25

-

-

-

-

-

-

PIT-1

1

35 756 434

-

-

-

-

-

-

-

-

-

  1. Cand gene = candidate gene; BTA = Bos taurus autosomes; CH = core haplotype; freq = frequency. *0.05, **0.01.