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Table 5 Statistics on common significant core haplotypes in dairy and beef breeds

From: Relative extended haplotype homozygosity signals across breeds reveal dairy and beef specific signatures of selection

 

Dairy breeds

  

Beef breeds

  

BTA 1

Sign.CH 2

Nb genes 3

Sum CH size 4

Avg. CH size 5

Sign.CH 2

Nb genes 3

Sum CH size 4

Avg. CH size 5

1

7

11

1521608

138328

7

13

2263213

174093

2

5

9

2216685

246298

8

11

2658549

241686

3

2

5

1619336

323867

7

21

3755847

178850

4

7

21

5956755

283655

6

11

1761288

160117

5

4

17

4506119

265066

5

11

1251127

113739

6

2

4

1467738

366934

5

12

5149692

429141

7

6

30

4842969

161432

3

28

11889191

424614

8

0

0

0

0

4

12

3512215

292685

9

4

7

1554863

222123

2

6

1106768

184461

10

4

17

8839762

519986

2

3

573138

191046

11

6

8

1841802

230225

1

1

100439

100439

12

2

8

4244133

530517

1

1

536461

536461

13

3

8

1933026

241628

2

8

985376

123172

14

0

0

0

0

3

9

692397

76933

15

5

9

1415405

157267

2

2

189094

94547

16

3

6

1302506

217084

4

6

905719

150953

17

3

4

471046

117762

2

9

1551010

172334

18

0

0

0

0

3

23

2961718

128770

19

3

23

5744143

249745

2

2

116938

58469

20

1

2

148886

74443

2

4

627971

156993

21

3

7

1930206

275744

1

5

1150760

230152

22

3

5

620674

124135

3

10

2411751

241175

23

0

0

0

0

1

1

68421

68421

24

2

18

9166004

509222

2

4

803770

200942

25

2

11

2016602

183327

1

3

329199

109733

26

2

4

466134

116534

4

7

776080

110869

27

1

1

631792

631792

2

3

1004717

334906

28

0

0

0

0

1

1

93464

93464

29

2

9

935209

103912

1

5

798300

159660

TOT

82

244

65393403

216932

87

232

50024613

190994

  1. 1 Bos taurus autosomes; 2number of significant core haplotypes (P < 0.05); 3number of genes identified in the significant regions; 4sum of significant core haplotypes size, in bp; 5average size of significant core haplotypes, in bp.