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Table 4 Accuracy obtained using the non linearB method

From: Sequence- vs. chip-assisted genomic selection: accurate biological information is advised

Method

Number of SNPs*

Number of QTN

  

20

100

High-density array

17 000

0.52 (0.19)

0.46 (0.08)

Sequence

335 000

0.49 (0.11)

0.46 (0.11)

Causal SNPs

20/100

0.98 (0.01)

0.95 (0.01)

  1. Accuracy is measured as the correlation between true and predicted breeding values of last generation individuals in cross-validation and is the average of 50 replicates; *number of SNPs used for prediction; for Sequence, all SNPs are used, for causal SNPs, only 20 or 100 QTN are used.
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Genetics Selection Evolution

ISSN: 1297-9686