From: Impact of QTL properties on the accuracy of multi-breed genomic prediction
Sc. | Nb HF 1 | Nb J 2 | RANDOM | VAR | ||||
---|---|---|---|---|---|---|---|---|
Moderately low MAF 3 | Very low MAF 3 | Extremely low MAF 3 | Moderately low MAF 3 | Very low MAF 3 | Extremely low MAF 3 | |||
1 | 2000 | 2000 | 0.78 (0.003) | 0.77 (0.002) | 0.72 (0.011) | 0.60 (0.001) | 0.44 (0.002) | 0.21 (0.002) |
2 | 2000 | 500 | 0.76 (0.004) | 0.75 (0.006) | 0.70 (0.023) | 0.54 (0.002) | 0.38 (0.004) | 0.18 (0.001) |
3 | 2000 | 100 | 0.75 (0.005) | 0.75 (0.007) | 0.70 (0.027) | 0.54 (0.002) | 0.36 (0.004) | 0.18 (0.002) |
4 | 2000 | 0 | 0.75 (0.005) | 0.75 (0.007) | 0.70 (0.029) | 0.54 (0.002) | 0.37 (0.004) | 0.18 (0.002) |
5 | 500 | 2000 | 0.79 (0.004) | 0.78 (0.002) | 0.70 (0.008) | 0.64 (0.001) | 0.47 (0.002) | 0.22 (0.006) |
6 | 100 | 2000 | 0.78 (0.007) | 0.76 (0.005) | 0.62 (0.017) | 0.62 (0.001) | 0.44 (0.002) | 0.19 (0.004) |
7 | 0 | 2000 | 0.78 (0.008) | 0.76 (0.006) | 0.58 (0.025) | 0.61 (0.002) | 0.42 (0.002) | 0.17 (0.004) |