From: Patterns of natural selection acting on the mitochondrial genome of a locally adapted fish species
Locus | Position | Type of selection | MEME | FUBAR | TreeSAAP (Category) | ||
---|---|---|---|---|---|---|---|
 |  |  | ω+ | P | dN-dS | Post. P |  |
ND1 | 3878:C/T | - |  |  | −9.924 | 0.997 |  |
 | 3926:C/T | - |  |  | −5.068 | 0.920 |  |
 | 3989:A/G | - |  |  | −8.576 | 0.995 |  |
 | 4424:C/T | - |  |  | −4.683 | 0.913 |  |
 | 4517:G/A | - |  |  | −4.613 | 0.993 |  |
 | 4568:C/T | - |  |  | −4.683 | 0.918 |  |
 | 4578:G/A | + | >100 | 0.175 | 3.793 | 0.918 | Alpha-helical tendencies (6) |
 | 4718:C/T | - |  |  | −5.153 | 0.902 |  |
ND2 | 5161:A/G | - |  |  | −5.017 | 0.923 |  |
 | 5290:A/G | - |  |  | −4.086 | 0.914 |  |
 | 5341:T/C | + | >100 | 0.564 | −0.328 | 0.569 | Alpha-helical tendencies (6) |
 | 5365:C/T | - |  |  | −7.495 | 0.991 |  |
 | 5416:A/G | - |  |  | −6.931 | 0.987 |  |
 | 5768:G/A | + | >100 | 0.216 | 0.855 | 0.805 | Alpha-helical tendencies (6) |
 | 5812:C/A | - |  |  | −3.339 | 0.902 |  |
COX1 | 6970:C/T | - |  |  | −6.446 | 0.987 |  |
 | 7021:A/G | - |  |  | −4.431 | 0.906 |  |
 | 7039:A/G | - |  |  | −4.428 | 0.905 |  |
 | 7483:G/A | - |  |  | −7.016 | 0.997 |  |
 | 7684:T/C | - |  |  | −6.419 | 0.983 |  |
COX2 | 8492:T/C | - |  |  | −4.749 | 0.888 |  |
ATP6 | 9281:A/G | - |  |  | −3.654 | 0.902 |  |
 | 9314:T/C | - |  |  | −2.981 | 0.891 |  |
 | 9356:C/T | - |  |  | −2.984 | 0.893 |  |
 | 9551:A/G | - |  |  | −1.253 | 0.928 |  |
ND3 | 10963:C/A | + | >100 | 0.423 | 2.706 | 0.901 | Equil const ion COOH (8) |
 | 10879:T/C | - |  |  | −6.959 | 0.996 |  |
ND4 | 11489:A/G | - |  |  | −3.031 | 0.979 |  |
 | 11693:C/T | - |  |  | −9.421 | 0.989 |  |
 | 11762:T/C | - |  |  | −8.488 | 0.994 |  |
 | 11891:G/A | - |  |  | −1.439 | 0.915 |  |
 | 11906:C/T | - |  |  | −4.551 | 0.912 |  |
 | 11937:A/G | + | >100 | 0.006 | 7.564 | 0.972 | Power to be at C-terminal (6) |
 | 12167:A/G | - |  |  | −6.616 | 0.982 |  |
ND5 | 14405:T/C | - |  |  | −4.071 | 0.900 |  |
 | 14570:C/T | - |  |  | −4.718 | 0.923 |  |
CYTB | 16178:A/G | - |  |  | −9.805 | 0.996 |  |
 | 16361:G/A | - |  |  | −2.654 | 0.950 |  |