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Table 1 Name of the breeds, breed acronyms, sample size before (n-PreQC) and after (n-PostQC) genotyping quality control procedures, expected heterozygosity (HE), observed heterozygosity (HO), Wright’s inbreeding coefficient (FIS), and proportion of polymorphic SNPs (PN)

From: Genetic diversity of Italian goat breeds assessed with a medium-density SNP chip

Breed name

Breed code

n-PreQC

n-PostQC

HE

HO

FIS

PN

Valdostana

VAL

24

24

0.37

0.36

0.05

98.20

Camosciata delle Alpi

CAM

31

30

0.40

0.40

0.02

99.70

Saanen

SAA

24

24

0.41

0.41

−0.001

99.66

Orobica

ORO

24

23

0.35

0.35

0.01

96.89

Bionda dell’Adamello

BIO

24

24

0.40

0.40

0.02

99.45

Valpassiria or Passeirer Gebirgziege

VPS

24

24

0.40

0.40

0.02

99.41

Ciociara Grigia

CGI

19

19

0.40

0.39

0.06

99.29

Di Teramo

TER

23

23

0.35

0.38

−0.06

95.13

Dell’Aspromonte

ASP

24

24

0.40

0.38

0.06

99.38

Nicastrese

NIC

25

24

0.40

0.38

0.07*

99.37

Argentata dell’Etna

ARG

25

24

0.41

0.41

0.02

99.63

Girgentana

GIR

24

24

0.36

0.36

0.004

96.55

Maltese from Sicily

MAL

16

16

0.37

0.36

0.06

97.87

Sarda

SAR

32

32

0.41

0.39

0.06

99.64

Maltese from Sardinia

SAM

15

15

0.36

0.36

0.02

96.76

  1. * P < 0.05