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Table 4 Summary of the QTL detected by the three analyses performed in this study

From: Detection and replication of QTL underlying resistance to gastrointestinal nematodes in adult sheep using the ovine 50K SNP array

OAR1

LA2

LDLA3

GWAS4

1

 

LFEC(a); IgAt(b)

 

2

 

LFEC(a); IgAt(b)

 

3

 

IgAt(a); IgAt(b)

 

4

 

IgA t(a) ; LFEC(b)

 

5

 

LFEC (a) ; LFEC (b)

 

6

LFEC(b)

LFEC (a) ; LFEC(b)

 

7

 

LFEC (a) ; LFEC(b); LFEC(c)

 

8

LFEC(a)

LFEC(a); LFEC(b); LFEC(c); LFEC(d); LFEC (e)

IgAt(c); IgAt(e)

9

 

LFEC(a); IgAt(a); IgAt(b); LFEC(b); LFEC(c); LFEC(d)

 

10

 

IgAt(b); IgAt(c); IgAt(e); LFEC(f)

IgAt(a); IgAt(b); IgAt(d)

11

 

LFEC(a); IgAt(c)

IgAt(b)

12

 

LFEC(a); IgAt(a); IgAt (b); IgAt(d)

IgA t(c)

13

 

IgAt

 

14

  

IgAt

15

 

IgA t(b) ; IgAt(c); IgA t (d)

IgAt(a)

16

 

IgAt(a); IgA t(b)

 

17

 

IgA t(a) ; IgAt(b);IgAt(c); IgA t(d)

 

18

   

19

   

20

 

LFEC

 

21

 

LFEC(a); IgA t(b) ; LFEC(c); LFEC(d); IgAt(d);

 

22

IgAt(a)

IgAt(a); IgAt(b)

 

23

 

IgAt(a); IgAt(b); IgAt(c); IgAt(d); IgAt(e)

 

24

 

LFEC(a); LFEC(b)

 

25

 

LFEC (b)

IgAt(a)

26

   
  1. 1 OAR ovine chromosome
  2. 2, 3, 4Significant QTL for the two analyzed traits (LFEC log-transformed faecal egg count, IgA t Box-Cox-transformed optical density ratio (ODR) values of immunoglobulin A activity) identified by the three genome scan performed in the present study, using linkage analysis (LA), combined linkage disequilibrium and linkage analysis (LDLA) and genome-wide association study (GWAS)
  3. a, b, c, d, e, fDifferent subscripts letters indicate that the QTL in the same chromosome are located at more than 5 cM/Mb of distance
  4. QTL in normal characters detected at the 5 % chromosome-wise level
  5. QTL in italic characters detected at the 5 % genome-wise level