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Table 2 Top 10 most significant SNPs selected to construct haplotypes for haplotype-based association mapping

From: A 0.5-Mbp deletion on bovine chromosome 23 is a strong candidate for stillbirth in Nordic Red cattle

SNP

MAF

Allele substitution effect

SE

p value

Chr23:13,259,463

0.062

−10.15

0.43

4.11e−115

Chr23:13,260,528

0.062

−10.15

0.43

4.05e−115

Chr23:13,260,771

0.062

−10.15

0.43

4.02e−115

Chr23:13,261,303

0.062

−10.15

0.43

4.03e−115

Chr23:13,264,527

0.062

−10.15

0.43

4.14e−115

Chr23:13,269,718

0.062

−10.15

0.43

3.48e−115

Chr23:13,270,817

0.068

−10.22

0.44

2.39e−115

Chr23:13,271,582

0.062

−10.15

0.43

3.48e−115

Chr23:13,313,896

0.059

−10.56

0.44

1.00e−120

Chr23:13,354,932

0.066

−9.84

0.42

3.30e−113

  1. Results are for calf survival at later lactations
  2. Effects and SE are given in breeding value index units
  3. MAF minor allele frequency, SE standard error