Fig. 3

Prediction accuracies achieved using increasingly more variants in the merged dataset for SCS, PY and IFL. Merged variants were either included alone (blue dots) or combined with the 41,682 50k-chip SNPs (green triangles). Horizontal lines indicate the prediction accuracy obtained using the average GEBV across subsets (dashed black), GEBV computed using all 4,154,064 variants (dot-dashed grey), or the 50k SNPs (red dashed)