Fig. 4

Genomic prediction accuracies for three methods and for different validation, SNP, and sample-to-positive (S/P) datasets. Genomic prediction accuracies in the outbreak and gilt acclimation (GA) datasets are in a and b, respectively. Results when using S/P datasets from S/P_0% to S/P_100% used for training are in panels designated by 0 to 100 %, respectively. Within each panel, color-coded bars represent genomic prediction accuracies for each method across SNP datasets. SNP datasets SNP_All, SNP_MHC, SNP₁₃₀, SNP_SSC7, and SNP_Rest are represented by All, MHC, 130, SSC7, and Rest, respectively. For the GA validation results (b), white error bars represent the standard deviation of accuracies across the seven cross-validation folds